Methylomonas sp. EFPC1: JWZ98_09855
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Entry
JWZ98_09855 CDS
T10319
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
meep Methylomonas sp. EFPC1
Pathway
meep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JWZ98_09855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meep03019
]
JWZ98_09855
03009 Ribosome biogenesis [BR:
meep03009
]
JWZ98_09855
Enzymes [BR:
meep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JWZ98_09855
Messenger RNA biogenesis [BR:
meep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JWZ98_09855
Ribosome biogenesis [BR:
meep03009
]
Prokaryotic type
rRNA helicases
JWZ98_09855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QSB03202
LinkDB
All DBs
Position
complement(2141668..2143416)
Genome browser
AA seq
582 aa
AA seq
DB search
MSDAPSSATPSFKDLSLSDTILKALESVGYETPSPIQAQIIPFVMAGRDVLGQAQTGTGK
TAAFALPILSRINLNQKDPQALVLAPTRELAIQVAEAFQSYAAHIKGFHVLPIYGGQDYT
SQLRQLNRGAHVVVGTPGRVMDHMRRGTLKLDQLSTLVLDEADEMLRMGFIDDVEWILEQ
TPSTRQTALFSATMPTEIRKIAQKYLNNPEQVTIKVKTATAANIRQRYWFVSGVHKMDAL
TRILEAENFDGMIIFVRTKTATIEVAEKLEARGFSASAINGDMSQALRERAIDNLKSGKL
DILIATDVAARGLDVDRITHVVNYDIPYDTESYIHRIGRTGRAGRTGDAILFVSPREKRL
LANIEQATKQKVEEMQLPSTDFINNARINRFKQRITDTLAGEELSFYNQLINQYQVEHNV
PALDIAAALAKLLQGDTPLLMKEPSKKPRKDAEEKGRSDRNDRNDRGPRREKGRVGAVEM
ETFRIEVGHADGVKPGNIVGAIANETGIDGDHIARIKIEEHYSTVELPAGMPKDLFQALK
KVRVVGKPLDISKFDPALVKKDKSKKRVGSPSRRGKNKDQAE
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgccccttcctccgccacgccttcctttaaagatttatcgctttcagacacc
attttaaaagcgctggaaagtgtcggttacgaaacgccttctccgattcaagcacagatt
attccgttcgtcatggctggtcgcgacgtgttgggccaagcccaaaccggtaccggtaaa
accgctgcattcgccttaccgattttgtcgcgtattaatctcaaccaaaaagacccgcaa
gccttggtgctagcccctacccgcgaattagcgatacaggttgccgaggccttccaaagt
tatgccgcccatatcaaaggctttcacgtcttgccaatctacggcggccaggattacacc
agccagctacgccaattgaatcgcggtgcgcatgtcgtggtgggtacaccgggacgggtc
atggaccacatgcgtcgcggcacgctaaaactggatcagctttctaccctggtcctggac
gaagccgacgaaatgttacggatgggctttatcgatgacgtggaatggattctggagcaa
accccatcgacgcgccaaaccgcgctgttctcggccaccatgccaaccgaaattcgcaaa
attgcgcagaaatacctgaacaaccccgaacaagtcaccatcaaggttaaaaccgccacc
gccgccaatattcgccaacgctactggtttgtcagcggtgtgcacaaaatggatgcgctg
acccgtattctggaagcggaaaacttcgacggcatgattatcttcgtcagaaccaaaacc
gctaccatcgaagtcgcggaaaaattggaagcgcgtggtttttccgcctcggcgattaac
ggcgacatgtcgcaagccttgcgtgagcgggctattgataatctgaaaagcggcaaactg
gatattctgattgccacagacgttgcggcccgcggcctggacgttgatcgtattacccat
gtcgtcaactatgacatcccttacgacaccgaatcttatatccatcgtatcggccgtacc
ggtcgtgccggccgcaccggcgacgcgattttgtttgtctcgccgcgcgaaaaacgcctg
ctggccaatatcgagcaagctacgaaacaaaaagtcgaagaaatgcaactgccttccacc
gactttatcaacaacgcccgcatcaaccgtttcaaacagcggattaccgatacgctggcc
ggcgaggaactcagcttttacaaccaattaatcaaccaatatcaggttgagcataatgtc
ccggcacttgacattgcagcggcgttagccaagttattgcaaggcgatacgcctttgctg
atgaaagagcccagcaaaaaaccacgcaaagacgccgaggaaaaaggccgttccgaccgc
aatgatcgtaacgaccgcggcccaagaagggaaaaaggtcgcgtcggcgcggtagaaatg
gaaaccttccgcatcgaagtaggccatgccgacggcgtgaaacccggcaatatcgtcggg
gctatcgccaacgaaaccggtatagacggcgatcatatcgcccgcatcaaaatcgaggag
cactacagcaccgtagaactgcccgccggcatgcccaaagatttgttccaggccctgaaa
aaagtccgggtagtcggtaaacctttggatatttccaaattcgacccggctttggtgaaa
aaagacaaaagcaaaaaacgggtcggctcaccatcaagacgcggcaaaaataaagaccaa
gccgaataa
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