Methylomonas sp. EFPC1: JWZ98_11555
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Entry
JWZ98_11555 CDS
T10319
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
meep Methylomonas sp. EFPC1
Brite
KEGG Orthology (KO) [BR:
meep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
meep03009
]
JWZ98_11555 (rlmD)
Enzymes [BR:
meep01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
JWZ98_11555 (rlmD)
Ribosome biogenesis [BR:
meep03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
JWZ98_11555 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
RrnaAD
Methyltransf_25
TRAM
TRM5-TYW2_MTfase
MTS
PCMT
Methyltransf_11
Cons_hypoth95
Methyltransf_15
Methyltransf_23
PrmA
Methyltransf_12
Methyltransf_4
Methyltr_RsmB-F
LRR_10
TehB
FtsJ
DOT1
Methyltransf_2
Motif
Other DBs
NCBI-ProteinID:
QSB03510
LinkDB
All DBs
Position
2455987..2457309
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AA seq
440 aa
AA seq
DB search
MAHKKKLPLDPVTVTIESLSHDGRGVSHVNGKVVFIDEALPGETLEFVYTDSRKDYAEGK
VVNLISRSEHRVEPACPHFGSCGGCSFQHVDDAEQINFKEDLLHDQFRRIGKVEIPQIWE
ALTGPHWGYRSKARMGVKWVAKKNRVLVGFRERRNPFLAEIDSCKVMNPIVGEKLIALGE
MIAGLTVKDKIPQIEVAIGDKECVLAFRVLEPPTDADKRRLREFAHQHQLSICLQPKGPD
TIVPLDGEPEVIPSYALAEQGVKFNFRPAMFTQVNYQINQKMVTRALAALELSKDDRVLD
LFCGLGNFTLPLATQAGQVVGVEGDLPLVKHARENAKLNNLDNVEFHVADLTKDLKDQPW
SKQKFTKVLLDPSRAGASEVLHNLKHWQPERIVYVSCNPSTLARDAGILVNELGYKLVKA
GVMDMFPQTAHVESIALFVK
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcccacaagaaaaaactcccgttagaccccgtcaccgttaccatagaatctttgtcc
cacgatggccgcggcgtcagccacgtcaatggcaaagtcgtgtttatcgacgaagccttg
cccggcgaaaccctggaatttgtctacaccgacagtcgtaaagactatgcagaaggcaaa
gtggtcaatctgataagccgatctgagcatcgggtcgaaccggcttgtccgcatttcggc
agttgcggcggttgcagttttcaacatgtcgatgacgccgaacagatcaatttcaaagag
gacttgctgcacgatcagttccgccgcatcggtaaagtcgagattccgcaaatctgggaa
gctttgaccggcccgcactgggggtatcgcagcaaggcgcggatgggcgtgaaatgggtg
gcgaaaaagaatagggtgttagtgggttttcgcgagcggcgcaatccgtttttagcggaa
atcgatagctgtaaagtgatgaaccccatcgtcggcgagaagctgatcgctttgggtgag
atgatcgccgggttgacggtgaaagacaaaattccgcaaatcgaagtggcgattggcgat
aaggaatgcgtactggcgtttcgagtgctggagccaccgaccgatgccgataaacgacgg
ctgcgcgagtttgcccatcaacatcagctcagcatttgtctgcagccgaaaggtccggat
accatcgtgcctttggacggcgagccggaagtcattccgagttacgccctagccgaacaa
ggcgttaagttcaatttccgcccggcgatgtttacccaagtcaattatcagatcaatcaa
aagatggtgacgcgggccttggcagcgctggaattaagcaaagacgacagggtgctggat
ttattctgcggcttgggtaatttcaccctaccactggcgacccaggcgggtcaggtcgtc
ggtgtggaaggcgacttgccgctggtcaagcacgctcgggaaaatgccaagttgaataac
ctggataatgttgaatttcatgtcgccgatctgactaaggatttgaaagaccaaccctgg
tccaagcaaaaatttaccaaggtgttgctggacccatcgcgggccggcgcatcggaagtg
ttacacaacttgaaacactggcaaccggagcggattgtttacgtatcttgcaacccatcc
accttggcccgcgatgccggaattttggtgaacgagctgggttacaagttggttaaggcc
ggggtgatggacatgttcccgcaaaccgcgcatgtcgaatcgatagccttgtttgtaaaa
tga
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