Methylomonas sp. EFPC1: JWZ98_15815
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Entry
JWZ98_15815 CDS
T10319
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
meep Methylomonas sp. EFPC1
Pathway
meep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JWZ98_15815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meep03019
]
JWZ98_15815
Enzymes [BR:
meep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JWZ98_15815
Messenger RNA biogenesis [BR:
meep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JWZ98_15815
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QSB00139
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All DBs
Position
3437749..3438888
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AA seq
379 aa
AA seq
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MPFSNLGLSEALIKAIADSGYTTPTPIQSKAIPAVLTGRDLLAAAQTGTGKTAGFTLPIL
HRLAQTDYGRNRPVRALILTPTRELAAQVAESVAKYGAHQQPRLKSEVVFGGVKINPQMM
RLRGGVDILTATPGRLLDLVSQNAVKLDKVEMLVLDEADRMLDMGFIKDIRKILAMLPKK
RQNLLFSATFSADIRKLTGDLLVNPVKIEVAVENAAADLIDQRVYTVSKTAKTALLTHLV
KTKDWQQVLVFTSTKHGANKLTEKLNIANIKAAAIHGNKSQGARTSALAGFKAGDIRVLV
ATDVAARGIDIAQLPHVVNFELPRSSADYVHRIGRTGRAGQNGQAVSLVSQDEYQALRLV
EKLIGLQIPREQVDGFAAA
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgccattttccaatctcggtttatccgaggctttaataaaagctattgccgattccggc
tacaccacccctacacctattcaaagtaaagccatacccgccgtgttaacaggccgagac
ttactggccgccgcgcaaaccggcaccggcaagaccgccggctttaccttaccgatcttg
caccgtttggcgcaaaccgactatggccgcaatcggcccgtgcgcgccctgatcttgacg
cccacacgagagttggccgcgcaagttgccgaatccgttgccaaatacggagcgcatcaa
caaccgcgcttaaaatccgaagtcgtattcggcggcgtgaagatcaatccacaaatgatg
cgcttgcgcggcggcgtggacattctgaccgcaacgccgggtcgtctgctggatttggtc
agtcaaaacgccgtaaaactggataaagtggaaatgttggtgctggacgaagctgaccgc
atgttggacatgggctttatcaaagacattcgcaaaatcctggccatgctgccgaaaaaa
cgccaaaacctgttgttttccgcgactttttccgccgatattcgcaagttaaccggcgat
ttgctggttaatccggtcaaaattgaagtggccgtcgaaaacgctgctgccgacctgatc
gatcaacgggtttataccgtcagtaaaaccgcgaaaaccgccttgttgacccatctggtg
aaaaccaaagactggcagcaagtattagtgttcaccagtaccaagcacggcgcgaataaa
ctcaccgaaaagctcaacatcgccaatatcaaagccgcggcgattcacggtaataaaagc
cagggcgccagaaccagcgctttggccggtttcaaagccggtgacattcgcgtgttggtc
gcgaccgacgtggcagcacgcggcatcgatattgcccaattgccgcatgtggtgaatttt
gaattaccgcgctcgtccgccgattatgtacaccgcatcggcagaaccggccgcgccgga
caaaacggccaggcggtttcgctggtatcgcaagacgaatatcaggccttgcgtctggtg
gaaaaactgataggtctgcaaatcccccgagagcaggtagacggcttcgcggccgcttaa
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