Methylomonas sp. EFPC1: JWZ98_16535
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Entry
JWZ98_16535 CDS
T10319
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
meep Methylomonas sp. EFPC1
Pathway
meep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JWZ98_16535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meep03019
]
JWZ98_16535
Enzymes [BR:
meep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JWZ98_16535
Messenger RNA biogenesis [BR:
meep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JWZ98_16535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_25
CMS1
AAA_19
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QSB00279
LinkDB
All DBs
Position
complement(3601435..3602721)
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AA seq
428 aa
AA seq
DB search
MLFSELGLSEQLLKAVAEQGYETPTPIQAQAIPVILQGRDVLAGAQTGTGKTAGFTLPLL
QLLQGQPVPQKPRPVRVLILTPTRELAMQVYESVRTYGKHLPFFAEAIFGGVSINPQIQK
IQRGTDIVVATPGRLLDLIQQQHLDLSKVEHFVLDEADRMLDMGFIRDIRRIIALLPSKR
QNLLFSATYAPEISALAEQILTDPVEIAVAKRNAAADTVSQLVYGISREYKRELLSYLIG
NGHWQQVLVFVRTKHGADRLAKQLIKDGIRCAALHGDKSQGARVRALEDFKNGSITALIA
TDIAARGLDIDQLPHVVNFDLPQVAEDYVHRIGRTGRAGAEGQAISLVDPEEAYLLAAVE
KLLKRQIPRVDDTGYPSVSLAVTNSKPQPKPAQPNKPATRRPQNGRPGESTKRAPNSRKP
RPQTAKPR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgttattttcagaattgggtttgtccgagcaactacttaaggcggttgccgaacaaggc
tatgaaaccccgacgccgattcaggcgcaggccattccggtcattttgcaaggccgcgat
gtgttggccggcgcgcaaaccggcaccggcaaaaccgccgggttcaccttgcctttgcta
cagttgctgcaaggacaaccggttccgcaaaagccgcgtccggttcgggtattgatttta
acgccaacccgcgaattggcgatgcaagtctatgaaagcgtcagaacctacggcaagcat
ttacctttttttgccgaggcgatatttggcggcgttagtattaatccgcagattcagaag
atccagcgcggcaccgatattgtcgttgctacgcccggccgtttgctggatttgattcag
caacaacatctggatttgtcgaaggtcgagcattttgtactcgacgaagccgaccgaatg
ctggatatgggttttatccgcgacattcgtcgaatcatcgcgttgttgccgagtaaacgc
cagaacctgctgttttcggcgacctatgctccggaaatcagcgcgctggcggaacaaatt
ctcaccgatccggttgaaatcgctgtcgccaaacgcaatgccgccgccgataccgtctcg
caattggtttatggcattagccgcgaatacaagcgcgaattgctgtcctacctgataggc
aacggccattggcagcaggtattggtgttcgttcgcaccaagcacggcgcggatcgtttg
gccaagcagttgatcaaggatggtatccgttgcgcggccttgcacggtgataaaagccag
ggggccagggtgagggcgcttgaagattttaaaaacggttcgattaccgcattgattgcc
accgacattgccgcgcgcggcctggacattgatcaattaccgcatgtggtgaatttcgat
ttgccgcaagtagctgaagattacgtacaccgcatcggccgtactggccgtgccggcgcc
gagggtcaggcaatttcgctagtcgatccggaagaggcttatttgctcgccgccgtcgag
aaactgttgaaaaggcagattccgcgagtcgacgataccggctatcccagcgtgtcattg
gccgtgaccaatagcaagccacagccgaaaccggctcagccgaacaagccagcaaccagg
cggccgcaaaatggccggcctggggagtcgactaaacgagcgccgaattcgcgcaaaccg
cgtccgcaaactgccaagccccgttaa
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