Methylomonas sp. EFPC1: JWZ98_19325
Help
Entry
JWZ98_19325 CDS
T10319
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
meep Methylomonas sp. EFPC1
Pathway
meep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
meep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JWZ98_19325 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meep03400
]
JWZ98_19325 (mfd)
Enzymes [BR:
meep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JWZ98_19325 (mfd)
DNA repair and recombination proteins [BR:
meep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JWZ98_19325 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QSB00780
LinkDB
All DBs
Position
4202409..4205852
Genome browser
AA seq
1147 aa
AA seq
DB search
MSLPTIPATALPQQGTTIYWSGLSGCGDSLTLAQTIAQEKRLLVIVTPDTQTALRLEHEL
AFFLDNSLPILHFPDWETLPYDVFSPLPEIISERLRTLALLPDTKRGALILSVATLMHRL
APREHILAHSFAIEVGGTLSLEVTRAKLEAVGYQCVSQVYQHGEFAVRGSILDLFPMGSK
QPYRIELFDDDVESIRSFDPDTQMSQDKMQKVELFPAREFPFTDEAIKRFRQAFREQFPD
ASPKNNLYLDVSKQIAPAGIEYYLPLFVERTESLFAYLPKTALFVLPANFAENAQRFYSE
ADERYQQRKYDTDRPLLPPTRLFLSAEEIQQHTDSFSRIVLDNQSETAHTFDCKQLPDVA
IDSRLKEPAQRLRQFIEGFDGKILFVAETAGHREGLIDKLKSVKLAAKQVQSWPEFLQTD
HSPCIVVAPMDHGLWLEDNKLAIITESQLSGEKVQQRRRRQKSAARALENIFNNLDELTI
GSPVVHQEHGVGRYLGLQILNVGGIDAEFLMLEYANNDRIYVPVASLHMIGRYSGVSAEN
APLHRLGTDQWSKAKKKAMERARDVAAELLDIHAKRAAREGFAFNIDNSDYNAFAAAFPF
EETPDQLSAIDAILQDMAATQPMDRVVCGDVGFGKTEVAMRAAFVAVQSGKQVAVLVPTT
LLAQQHYQNFRDRFADWPVRIEVTSRFVTPKQQKAIADDLADGKVDIVIGTHKLLSKEMK
YKALGLVIIDEEHRFGVTQKEHFKKLRHELDLLTLTATPIPRTLNMAMAGLRDISIIATP
PPNRHAIKTFVTEWIDSQVQEACQREIKRGGQVFFLHNDVKTMDKMMRELGELVPEARIQ
IAHGQMAERELEQIMLDFYHQRFNVLIATTIIESGIDIPSANTIVINRADKLGLAQLHQL
RGRVGRSHHRAYAYCIVPPKTLMTKDAIKRLEAFETSGELGAGFMLSSHDMEIRGAGELL
GDEQSGQIQEIGFTLYTELLERAVKALKSGKQPELDAPLDTGPEVDLQVAALIPEDYLPD
IHARLVLYKRIASAETEDDLRKLKIEMIDRFGLLPDQVKALFAITELKQHAAHLGIRKIE
AHATGGRIVFIASPQIDTGELILMIQSQSQVYKFDGADKLRFTQTFKDMEDKVAFLEKLL
ARLGAKA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtccttaccaacaatccccgcaactgcattgccacaacaaggcaccacaatatactgg
agtggtctgagcggctgcggcgactcgctgacgctggcgcaaacgattgctcaggaaaag
cgcctgctagtcatcgtcaccccagacactcaaactgcgctgcgcctggaacacgagctg
gcgttctttttggacaacagcctgccgattctgcattttccggattgggaaaccctgcct
tacgacgtattctcgccattaccggagattatctccgaacgcttgcgcactctggccttg
ctaccagacaccaagcgcggcgcgctgattttgtcggtggcgacgctgatgcatcgtctg
gccccacgcgagcatattttggcgcacagctttgcgatcgaagtcggcggcactttgagc
ctggaagtcacccgcgccaaactggaagcggtcggctatcaatgcgtctcgcaagtctat
caacacggtgaatttgcggtgcgcggctcgattttggatttgtttccgatgggatccaag
caaccctaccgcatcgaattgttcgacgacgacgtcgaatcgatccgtagtttcgacccc
gacacgcaaatgtcgcaagacaaaatgcagaaagtcgagctattcccggcccgcgaattt
ccatttaccgacgaagccatcaaacgcttccgtcaggccttccgcgagcaattcccggac
gcctcgcccaagaataatctttatctcgacgtttccaagcaaatcgccccggccggcatc
gaatattacttgccgctgttcgtcgagcgcaccgaatcgctgttcgcctatttgcccaag
acagcgctgtttgtgctaccggccaatttcgccgaaaacgcccagcgcttttacagcgaa
gccgacgaacgctatcagcaacgcaaatacgacaccgatcgccccttattgccgccgact
cgtttgtttctgtcggccgaggaaatccaacaacacaccgacagcttcagccgcatcgta
ctggacaatcaatctgaaaccgcccacacgttcgattgcaaacagctgccggacgtagca
atagacagtcgcttaaaagaacccgctcagcgcctgcgccaattcatcgaaggcttcgat
ggcaaaatcctgttcgtcgccgaaaccgccggccaccgcgaaggcctgatcgacaaatta
aaaagtgtcaaactcgccgccaaacaggtccaaagctggccagagtttttacaaaccgat
cactcgccgtgcatcgttgtcgcgccgatggaccacgggctttggctggaagacaacaag
ctggccatcatcaccgaaagccagctcagcggcgaaaaagtccaacaacgccggcgccgg
caaaaatcggcggcgcgggcgctggaaaacattttcaacaaccttgatgagctgacgata
ggctcgccggtggtgcatcaggagcacggcgtcggccggtacttgggcttgcagattctc
aacgtcggcggtatcgacgccgaatttttgatgttggaatacgccaataacgacaggatt
tatgtgccggtggcttccttgcacatgattggccgttacagcggggtcagcgccgaaaat
gcgccgctgcatcgtttaggcaccgaccaatggagcaaggccaagaaaaaagccatggag
cgcgcccgcgacgtggccgccgagttgctggacatccacgccaaacgcgccgcccgcgaa
ggctttgcctttaacatcgataacagcgactacaacgccttcgccgccgccttcccgttc
gaggaaaccccggaccagctcagcgccatcgacgccatcttgcaagacatggccgccacc
cagccgatggatcgcgtggtttgcggcgatgtcggtttcggcaaaaccgaagtggcgatg
cgcgcggcctttgtggcggtgcaaagcggcaaacaagtcgcggtgctggtgcccaccacc
ctgctcgcccagcagcattatcaaaactttcgcgaccgcttcgccgactggccggtgcgc
atcgaagtcacctcgcgcttcgtcacccccaaacagcaaaaagccatcgccgacgacttg
gccgacggcaaggtcgacatcgtcatcggcacccacaaattgctgtccaaggaaatgaaa
tacaaggccttgggcctggtgatcatcgacgaagaacaccgctttggcgtgacgcaaaaa
gaacatttcaaaaagctgcgccacgagctggatttgttaaccctgaccgcgacaccgatt
ccgcgcaccttgaacatggccatggccggcctgcgcgatatttccatcatcgccacgcca
ccgccgaaccgccacgccatcaaaactttcgtcaccgaatggatagattcgcaagtgcag
gaagcttgccaacgggaaatcaagcgcggcggccaggtgtttttcctgcacaacgacgtc
aagaccatggacaagatgatgcgcgaactgggcgaactggtgccggaagcgcgcatccag
atcgcccacggccagatggccgagcgcgagctggagcagatcatgctggatttttaccac
cagcgcttcaacgtgttgatcgccaccaccatcatcgaaagcggcatcgacatccccagc
gccaacaccatcgtcatcaaccgcgccgacaaactcggtctggcgcagttacaccagttg
cgcggccgggtcggccgttcgcaccaccgcgcctatgcctactgcatcgtgccgccgaaa
acattgatgaccaaggacgcgatcaagcgcctggaagccttcgagacttccggcgaactg
ggcgccggcttcatgctgtcctcgcacgacatggaaatccgcggtgccggtgaattattg
ggtgacgaacaaagcggccagatccaggaaatcggctttaccttgtacaccgagttgctg
gaacgggcggtcaaagccttgaaatccggcaaacagccggaattggacgcgccgctggac
accggcccggaagtggatttgcaagtcgccgcgctgatcccggaagactacttgcccgac
attcacgcgcgcctggtgttgtacaaacgcatcgccagcgccgaaaccgaagacgatttg
cgcaaactaaaaatcgaaatgatcgaccgctttggattgctaccggaccaagtcaaagcc
ttgttcgccatcaccgaactgaaacaacacgccgcgcacctaggcatccgtaaaatcgaa
gctcacgccaccggcggccgcatcgtgtttatcgccagcccgcaaatcgacaccggcgag
ttgatcctgatgatacagagccagtcgcaggtgtataaattcgatggcgcggacaaatta
cgctttacccagacctttaaggatatggaggataaggtggcgtttttggagaagttgttg
gcgaggttgggggcgaaagcttag
DBGET
integrated database retrieval system
