Methanobacterium sp. ERen5: NKF70_03925
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Entry
NKF70_03925 CDS
T10395
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
meer Methanobacterium sp. ERen5
Brite
KEGG Orthology (KO) [BR:
meer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
meer03016
]
NKF70_03925
Enzymes [BR:
meer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NKF70_03925
Transfer RNA biogenesis [BR:
meer03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NKF70_03925
Prokaryotic type
tRNA splicing ligases
NKF70_03925
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UTB33414
LinkDB
All DBs
Position
716400..717845
Genome browser
AA seq
481 aa
AA seq
DB search
MVMEELKKVRDCVYEIPSSYKKGMRVPGRIYQDDEGIESLEKGAADQVANVATLPGIQKF
SIGLPDIHFGYGFSIGGVAAFSSRTGVISPGGVGFDINCGVRMVRTNLTEDDVKPRIKEL
IDTLFKNVPSGVGSKGKVRLNEGEIDDVLNNGAEWAVENGYGWESDLKFLEENGKMESAD
SDAVSAKAKKRGIPQLGSLGSGNHFLEIQKMEDIYDEKAAKAFGIEEGQITIMIHSGSRG
CGHQICADYLRTMDKAYKAYNIDLPDRQLACAPVDSQEAQDYFKAMSCAANYAWTNRQMI
LHWVRESFEEVYKKDSEAMEMGVVYDVAHNIAKKEKHTIKGIDTEVYVHRKGATRAFGPG
RKEIPEEYRKIGQPVMIPGTMGTASYILKGTETAMEETFGSTAHGAGRKLSRAGAKREFN
GEEVKSMLASKGITLKANSMPVVAEEAPGAYKDVDQVVNVCHKAGISLLVGKMIPIGVAK
G
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggttatggaagaattaaaaaaggttagagattgtgtatatgaaataccttccagctac
aagaagggtatgagggtgcctggaagaatttatcaggatgatgaaggaattgaaagtctt
gaaaagggtgcagcagatcaagttgcaaatgttgcaacactcccaggaattcaaaaattc
tctataggattaccagatattcacttcggatatggatttagtatcggtggagtagcagca
ttcagttcaagaactggagttataagtccaggtggcgtaggttttgacataaactgtgga
gtgagaatggtgagaactaacctcacagaagacgatgttaaacctcgcatcaaagaactt
atagataccctgtttaaaaatgtgccatcaggtgtaggtagtaaaggtaaagttcggtta
aatgagggagaaattgacgatgttttaaacaacggtgcagaatgggctgttgaaaacggt
tacggttgggaatctgacctcaaattccttgaagaaaatggtaagatggaaagtgcagac
tctgacgcagtcagtgcaaaggctaaaaagagaggaataccccagctaggatccctcgga
tcaggaaatcacttcctagaaatccagaaaatggaagatatttacgatgaaaaagctgcc
aaagcctttggaatagaagaggggcaaattaccatcatgatccattctggatcccgggga
tgtggacaccagatatgcgcagattatctaagaacaatggacaaagcttataaagcttac
aacatcgatcttccagatcgtcagcttgcatgtgcacctgtagattctcaagaagctcaa
gattatttcaaagccatgtcttgtgctgcgaattatgcttggaccaacagacagatgatc
ctccactgggtcagagaatcctttgaagaagtatacaaaaaggattcagaagctatggaa
atgggcgtggtctacgatgtagcacacaacatagccaaaaaagaaaaacataccatcaaa
ggaattgatacagaagtttacgtccacagaaagggtgctacaagggcctttggtcctgga
agaaaggaaattccagaggagtaccgaaaaattggtcaaccagtcatgatacctggtacc
atgggaacagcatcctatattttgaagggaacagaaacagccatggaagaaacatttgga
tcaacggctcatggtgctggtagaaaactcagtagagctggtgctaaacgagaattcaat
ggtgaagaagtgaagagcatgcttgcatctaagggaattaccttaaaagcaaattccatg
ccagtagttgcagaagaagcacctggagcttacaaagatgtggatcaagttgttaacgtc
tgtcacaaagcaggaatctcattattagtgggtaaaatgattccaattggtgtagcaaag
ggataa
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