Methanobacterium sp. ERen5: NKF70_06225
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Entry
NKF70_06225 CDS
T10395
Name
(GenBank) OB-fold nucleic acid binding domain-containing protein
KO
K07466
replication factor A1
Organism
meer Methanobacterium sp. ERen5
Pathway
meer03030
DNA replication
meer03420
Nucleotide excision repair
meer03430
Mismatch repair
meer03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
meer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NKF70_06225
03420 Nucleotide excision repair
NKF70_06225
03430 Mismatch repair
NKF70_06225
03440 Homologous recombination
NKF70_06225
03460 Fanconi anemia pathway
NKF70_06225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
meer03000
]
NKF70_06225
03032 DNA replication proteins [BR:
meer03032
]
NKF70_06225
03400 DNA repair and recombination proteins [BR:
meer03400
]
NKF70_06225
Transcription factors [BR:
meer03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
NKF70_06225
DNA replication proteins [BR:
meer03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
NKF70_06225
DNA repair and recombination proteins [BR:
meer03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
NKF70_06225
MMR (mismatch excision repair)
NKF70_06225
DSBR (double strand breaks repair)
HR (homologous recombination)
NKF70_06225
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
Rep_fac-A_C
OB_Ssb-like
SHLD2_OB1
POT1PC
OB_MEIOB_N
zf-dskA_traR
DUF5088
tRNA-synt_1g
TEBP_OB2-like
DUF7129
Zn_ribbon_6
Zn_Ribbon_TF
FYVE
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UTB33796
LinkDB
All DBs
Position
1124261..1126558
Genome browser
AA seq
765 aa
AA seq
DB search
MEERKHDYEDVSFMSELDIARTIIGEYINEENKPLSEANEAHKITELQTGSDNISVTGRI
MHISNVKKFTSKKGREGKLANMIITDDTGEIRVVLWTENIKFLKKVTEGDVIKINNAEVK
QGFREDELHMKLDSNIQKLDSEEYESFPKYDDKITDIKDIQGESQVNVIARIVRIPRVRT
FDKNGKEGKVLSMEIQDKTGKTQFTLWNNDTNLVKDLDLKEGDSIKILGGLGRTRDGEVS
LTHSWIGRMIKGDFDLPEYSEKILKIGDAHEMRDITVVGIICKVYDTITFMRNDESTGQV
RSLEMEDDTGSIRITLWNDDANMEIEKGNIIKIIGGNIEFDEYSGTDYRINTNWNTKIIV
NPQIDPDLSKKLQECGKYLKPLKIAAIHEMDEEGEEIDVVGRIVKTYDPSEFNRDDGTTG
KVRSVEIGDGTGVIRSSFWDDKADFAFNEGKAIKIENARTRLGNYNMDLSIGRTARIVDP
TPEEIDALPSMNEIEDSLYSTKTISQLNEDERNVRIVGRVVNLYDPNEFQRGDGTNGLVR
TVEIADGTGVLRSSFWDDKAEMPLKTGDAIKIENPRISMRDDHLEISVGRNTLVTTATAD
ESEKLPSFDDIKEMIYKTKKIDDIEEEDRNIKVTGEITEAYGNRILYEMCPNCNKRLTLI
DNSYECEICGEEIEEPKYLMIVPCVIEDSTGTMRVTFFSAAAEELVGMKINEVIDVIQKT
GDEGSLEDKVSELVGHEITVIADASFDEYNEEIRLNAKKLVDIKL
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaagaaagcatgattatgaagatgtgagcttcatgagcgagctggatatagct
cgtacaatcattggagaatatattaatgaggagaataagcctttatctgaagcaaacgag
gcacataaaataacagaactccaaacaggtagcgacaacatcagtgttaccgggagaata
atgcatatttcgaacgtcaaaaaattcaccagtaagaagggcagggaaggtaagcttgcc
aacatgataataacagatgacaccggtgaaattcgtgttgttctttggactgaaaatatt
aaattcctgaaaaaagtgaccgaaggagacgtaataaaaataaacaatgctgaagtcaaa
cagggattccgggaagatgaattgcacatgaaattggattcaaacattcaaaaactcgac
agcgaagagtatgagtccttcccaaaatatgatgataaaataactgacatcaaagacatt
caaggcgaaagccaagtaaacgtaatcgcaagaattgtcagaatccctagagtaaggact
tttgacaaaaacggaaaggaaggaaaggttttatccatggaaattcaggataaaactggc
aaaactcagttcactctctggaacaacgacacaaatcttgttaaagatctagatctcaaa
gaaggagattcaataaaaatactcggtggccttggaagaacaagagacggtgaagtttca
ttaacacactcatggattggaagaatgatcaaaggagattttgatctcccagaatactca
gaaaaaatcctaaaaattggtgacgcccatgaaatgcgcgatataacagttgttggaata
atatgcaaagtatacgatacaataaccttcatgaggaatgatgaaagcacaggtcaggtt
cgatctctagagatggaagatgatactggatccataaggataacgctgtggaacgatgat
gcaaacatggaaatcgaaaaaggaaacatcatcaaaataatcggcggaaatattgaattt
gacgaatattcaggtaccgactacagaataaacaccaactggaacactaaaataattgtc
aatccccaaattgatcctgatttaagcaaaaagcttcaagagtgtggaaaatatttgaaa
cctcttaaaatagccgcaattcatgaaatggatgaagaaggggaagagatcgatgtggtt
ggcagaattgttaaaacctacgacccaagtgaatttaatagggacgacggaaccacaggt
aaagttaggtcagtggagataggagatggtactggagtaataagatcctccttctgggac
gataaagcagattttgcttttaacgaaggaaaagcaatcaaaattgaaaacgccagaacc
cgactcggtaactacaacatggatctgagcattggcagaaccgcacgaatagttgatcct
actccagaagagatcgacgcccttccaagtatgaacgaaatagaagactcactttactcc
accaaaaccataagccaattgaatgaagatgaaagaaacgttagaatagttggaagagtg
gttaacctctacgatccaaatgaattccaaaggggagatggtactaacggtctggttaga
acagtagaaatagctgatggcactggagttttaagatcttcattctgggatgataaagca
gaaatgccattaaaaaccggagacgctataaaaattgaaaatccccgcatcagcatgcgc
gacgaccatctagaaattagtgttggtagaaacaccttagttaccactgcaacagcagat
gaatctgaaaaactcccatcctttgatgatataaaggaaatgatctacaaaaccaagaag
atcgatgatattgaagaagaagacagaaacataaaggtaactggagaaatcactgaagcc
tacggaaacagaatcctgtacgaaatgtgccctaactgtaacaaacggttaacactcata
gacaattcctacgaatgtgaaatctgtggtgaagaaatcgaagaaccaaagtacttgatg
atagttccatgcgtgattgaagacagtaccggaaccatgagggttacatttttcagtgca
gctgcagaagaactggttggaatgaaaatcaatgaagtcatagatgttatccaaaaaact
ggggatgaaggatcacttgaagataaagtctcagagcttgttggacacgaaatcactgtg
attgcagatgccagtttcgatgagtacaacgaagagatcaggctcaatgccaaaaaactg
gtggatataaaattataa
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