Methanobacterium sp. ERen5: NKF70_09100
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Entry
NKF70_09100 CDS
T10395
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
meer Methanobacterium sp. ERen5
Pathway
meer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NKF70_09100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meer03019
]
NKF70_09100
03009 Ribosome biogenesis [BR:
meer03009
]
NKF70_09100
Enzymes [BR:
meer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NKF70_09100
Messenger RNA biogenesis [BR:
meer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NKF70_09100
Ribosome biogenesis [BR:
meer03009
]
Prokaryotic type
rRNA helicases
NKF70_09100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UTB31684
LinkDB
All DBs
Position
1688739..1690325
Genome browser
AA seq
528 aa
AA seq
DB search
MEKLRFKDLNISSEIQRAVEDMGFEEATPIQSLAIPHVLEGKDVTGQAQTGTGKTAAFGI
PILETVDPSNKDLQAVILCPTRELAIQVAEEMKKLSKYMRKIGILPVYGGQPIERQIKAL
KKGVQIIIGTPGRVMDHMRRGTIDMGFVKMLILDEADEMLDMGFREDIEFVLDYIPDERQ
ILLFSATMSPDILYITRRYQESPEFLKVVPKELTVPEIKQIYFEVKEKMKLDVLSRLLDI
NDFKLSLVFCNTKRRVDKLVNHLQVRGYAADGLHGDMSQRQRDNVMSKFRSGNIEILVAT
DVAARGIDVDNVEAVFNFDVPNDDEYYVHRIGRTGRAGKTGVAYTFVSGKEVYQLRDIMR
YTKTKIEQHQIPSASDVAEIKTTNFLEKIKRIINNDNIDNEVRMVEKMMEEDYSSVETAA
ALLKIVMEKSGTKSKTNTEDYGDTGAASGQVRLFINIGRKDKVKVRDIIRAIADKTGLSS
SAIGKVDIFDKFSFVEVPKQSASDVISTMSGTKVKGRAVNMEPANRKS
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacttagatttaaagatttaaatatatctagcgagatacagcgtgctgttgaa
gatatgggttttgaggaggccactccaattcaatcattagccattccccatgtcctcgag
ggcaaagatgtcacaggtcaggcccagacaggaacaggaaaaacagcagcatttggaata
ccaattctcgaaactgtggatccgtccaataaagatctacaggccgtcatactgtgtcct
acaagggaacttgcaatacaagttgccgaggaaatgaaaaaactgtccaagtacatgcga
aaaattggaatactaccagtttacggtggccaaccaatagaaagacaaataaaagcactt
aagaagggtgttcagatcataataggcacacctggaagagtgatggatcatatgaggcgt
ggaaccatagatatgggtttcgttaagatgctgatccttgatgaagctgatgaaatgctt
gacatgggattcagggaagatattgaattcgttttggattatattccagatgaaagacag
attcttctgttctctgccacaatgtccccggatattttgtacataacaaggagataccag
gaatcaccagaatttttaaaggttgttcccaaggaactaacagtacctgaaattaagcag
atctatttcgaagtgaaagaaaagatgaaacttgatgttttatcccgtttactcgatata
aatgattttaaactatcattagttttctgtaacaccaaaagaagggtggacaaacttgta
aaccacctgcaagtaaggggatacgctgctgacgggcttcatggagacatgagtcagagg
cagagggacaatgtaatgtccaagttcagatctggaaacatcgagatcctcgttgcaaca
gatgttgctgcaaggggaatagatgtggacaacgttgaagcagttttcaactttgatgtt
ccgaacgatgatgaatactacgttcacagaattggaagaaccggaagagcaggtaaaact
ggtgttgcatacacctttgtttctggtaaagaagtttaccagcttagggatataatgaga
tacacaaagaccaaaattgaacaacaccaaataccatctgccagtgatgttgcagagatc
aaaacaaccaatttccttgaaaaaatcaaacgcattatcaacaatgacaacatcgacaac
gaagtccgcatggttgagaagatgatggaagaagattacagctcagttgaaactgctgca
gcacttctaaaaattgtcatggaaaagagcggaacaaaatccaaaacaaatacagaggac
tatggagatactggggctgcatccggacaggtcagacttttcataaacattggaagaaag
gacaaggtcaaagtaagggatatcataagggccatagcagataaaacaggcctttcaagt
tctgcaattggaaaggtggatatcttcgataaattctcatttgtagaagttccaaaacaa
agtgcaagtgatgttatttccacaatgagcggaacaaaggtcaagggcagagccgtcaat
atggaacctgcaaacaggaaaagctaa
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