Methanimicrococcus stummii: MmiEs2_09980
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Entry
MmiEs2_09980 CDS
T09451
Symbol
alkA
Name
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
mees
Methanimicrococcus stummii
Pathway
mees03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mees00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MmiEs2_09980 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mees03000
]
MmiEs2_09980 (alkA)
03400 DNA repair and recombination proteins [BR:
mees03400
]
MmiEs2_09980 (alkA)
Enzymes [BR:
mees01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
MmiEs2_09980 (alkA)
Transcription factors [BR:
mees03000
]
Prokaryotic type
Helix-turn-helix
AraC family
MmiEs2_09980 (alkA)
DNA repair and recombination proteins [BR:
mees03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MmiEs2_09980 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HTH_31
LamB
HTH_23
Motif
Other DBs
NCBI-ProteinID:
WNY28794
UniProt:
A0AA96V8M4
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All DBs
Position
1036300..1037769
Genome browser
AA seq
489 aa
AA seq
DB search
MTEEDNRELYTAFKSKDSRFDGRFFVGVSSTGIYCRPVCRAKMPKAENCTYFKTAAEAEN
AGFRPCLLCRPEIAPGVSAAPTDATADLARRAAKLLEKECGSKQSVEELAARLGCTGRHL
RRVFTAEYNVSPIQYLQTCRLLLAKNLLTETNLPIQKVAKASGFRSLRHFNALFKDQYRL
SPTMFRQNADNKKQSETITLALGYRPPYQWQQILEFLEARAAPGVEIVRNGEYLRTVHMT
AEAQHLYGRVRVGNRPDKNVLTVTISENLLPALPDILFRIRHLFDLHCNPEIVYETLAEM
NDIKPGLCVLGTRLPGCFDSFETAVRAILGQQITVKAARTLAGRLAETYGTPIQTGIEEL
THTFPAPEDILALSDSITEHLGVLGIISARSKTILALAQTFADGTVNFDFCAQPEIEMKK
LLKIQGIGPWTAQYIAMRTMGWPDAFLETDAGIKKALAPRTEKEMTELALDWKPWRSYAT
INLWNSLKE
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagaagacaatcgagagttatacacggcttttaaatcaaaggacagtcgattc
gacggccgtttttttgtcggcgtatcatcgaccggaatttactgccgcccggtttgccgc
gcgaaaatgcccaaagccgaaaattgcacatatttcaaaacggcggcggaagcggagaac
gcaggatttcggccgtgtctgttatgccgccccgagattgcgcccggcgtttctgccgcc
cccaccgacgcgacagcagatcttgcccgccgcgcagcaaaacttttggaaaaggaatgc
ggaagcaaacaaagcgtggaggagcttgccgcgcgtctcggctgcaccggccgccatctg
cgcagggtgtttacggcggaatataatgtttctccgattcaatatttacaaacttgtcga
ctgcttcttgcgaaaaacctgcttacggagacaaatctgccgattcaaaaagtcgcgaaa
gcatcgggttttcgaagtttgcggcattttaacgcattgtttaaagatcaataccggctt
tcaccgacaatgtttcgccaaaacgccgacaacaaaaaacaatcggaaacaatcacattg
gcattaggctaccggccgccatatcaatggcagcaaattcttgaatttttggaagcgcgc
gcggctcccggtgttgaaatcgtccgaaacggcgaatatttgcgtaccgtgcatatgacc
gcagaggcgcagcacttgtacggccgggtgcgcgtcggcaaccgcccggacaaaaatgtc
ttaacggtcacgatttccgaaaacctgcttccggcgctaccggatattcttttcagaata
cggcatttatttgatttgcattgtaatccggagatcgtttacgaaacgcttgccgaaatg
aatgatattaaaccaggactttgcgttttgggaacgcggcttccgggatgttttgattcg
tttgaaacggcggttcgcgcgattttgggacagcaaatcaccgtcaaagcggcgcgcacg
ctggccggacgactggcggaaacgtacggaacaccgattcaaaccggaattgaagagctg
acgcacacatttccggccccggaagacattttggctttaagcgattcaatcacggaacat
ttaggcgttttaggaattatttcggcgcgttcgaaaacgattttggcgctggctcaaacg
tttgccgacggcactgtcaattttgacttttgcgctcagccggaaattgaaatgaaaaag
ttattgaaaattcagggcatcggcccttggacggcgcaatatatcgcgatgcggacgatg
ggctggccggatgcgtttcttgaaaccgatgccggcattaaaaaagcgttggcgccgcgc
acggaaaaagaaatgacggaattggctttggattggaaaccgtggcgcagttacgcgaca
atcaatttatggaattcattaaaagaataa
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