Methanimicrococcus stummii: MmiEs2_15420
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Entry
MmiEs2_15420 CDS
T09451
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mees
Methanimicrococcus stummii
Brite
KEGG Orthology (KO) [BR:
mees00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mees03016
]
MmiEs2_15420 (rtcB)
Enzymes [BR:
mees01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MmiEs2_15420 (rtcB)
Transfer RNA biogenesis [BR:
mees03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MmiEs2_15420 (rtcB)
Prokaryotic type
tRNA splicing ligases
MmiEs2_15420 (rtcB)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
G3P_pilus-bind
Motif
Other DBs
NCBI-ProteinID:
WNY29316
UniProt:
A0AA96ZYW3
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All DBs
Position
complement(1698517..1700001)
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AA seq
494 aa
AA seq
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MFNQNEDKNESNESVTDELNRVNDNIWDIPKTHAFGMNVPGRLFLSEKLMGTIDKETINQ
VANVAMLPGILDYSMAMPDVHLGYGFTIGGVAAFDEEEGVISPGGVGFDINCGVRLMKTN
LLREEAVPHIKMLTENLFQKIPSGVGSKGEFKVTDTELTEAFLHGSQWAVEAGYGIESDT
KNCESYGFMEGGNPDIVGTKARKRGRPQFGTLGSGNHFLEIQYVDKIYDPTAAAAYGLSE
GQVTVMIHCGSRGAGHQICTDHLQTLNQAVKKYKINVPDMQLACAPAKSKEAQDYFDAMK
CGANYAWANRQIIMHWTREVFEKFYDKDTDALGMELLYDVAHNVAKYETHEVDGKKQDVY
VHRKGATRAFPAGHKEVPQQYRDVGQPVLIPGSMGTPSFVLKGGPNSMSLSFGSACHGAG
RVMGRGKAKDNMSGEAIQEELARQGITVRAERATVIAEEAPSVYKNSDDVVDVVDSLGIA
QKVARLIPIGVIKG
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatcaaaatgaagacaaaaacgaatccaatgaatccgtcacggacgaattaaac
cgcgtcaatgacaacatttgggacattccgaaaacgcatgcgtttggaatgaatgtcccg
ggcagactttttctgtcagaaaaattaatgggaacgattgacaaagaaacaatcaatcaa
gtcgcgaatgtcgcgatgctgcccggcattttggattattcgatggcgatgcccgatgtc
cacctcggctacggttttacgatcggcggtgttgcggctttcgatgaagaagaaggcgtg
atcagccccggcggcgtcggttttgacatcaactgcggcgttcgcttaatgaaaacgaat
ctgttaagagaagaagcggttccgcacatcaaaatgctgacggaaaatctgtttcaaaaa
attccgtccggcgtcggctcaaaaggcgaatttaaagtgaccgacaccgaattaacggaa
gcttttctgcacggctcacagtgggcggttgaagccggatacggtattgaaagcgatacc
aagaactgcgaatcttacggttttatggaaggcggaaaccccgacattgtcggaacgaaa
gctcgaaaaagaggacgaccgcaattcggaacgctcggaagcggcaatcactttttggaa
attcaatacgttgacaagatttacgatccgacagctgccgctgcttacggcctttccgaa
ggtcaggtcaccgtcatgattcactgcggctcacgcggcgccggtcatcaaatttgcacc
gaccatttgcaaacgctgaatcaagccgttaaaaaatacaaaatcaacgttcccgacatg
cagctggcttgcgcgccggcgaaatccaaagaagcgcaggattattttgacgcgatgaaa
tgcggcgccaattacgcgtgggcgaaccgccaaatcattatgcattggacgcgcgaagtc
tttgaaaaattttacgacaaagacaccgacgcgctcggcatggaattgctttacgatgtc
gcccacaatgtcgcgaaatatgaaacgcatgaagtggacggcaaaaagcaggacgtttac
gttcacagaaaaggcgcgacgcgcgcgtttccggccggacacaaggaagtgccgcagcag
tacagagatgtcggtcagcccgttttgattccgggcagcatgggaacgccgtcatttgtt
ttaaaaggcggtccgaattcgatgtcgctttcattcggcagcgcgtgtcacggcgcgggg
cgcgtgatgggacgcggcaaagcaaaagataatatgagcggtgaagccatccaagaagag
ctggcaagacaaggaataacggtcagagccgaacgagcaaccgttatcgccgaagaagcg
ccgagcgtttacaaaaacagcgacgatgttgtcgacgttgtcgacagtctcgggattgcg
caaaaagtcgcgcgtctgattccgatcggcgtcatcaaggggtga
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