Methanosarcina sp. WH1: MSWH1_0017
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Entry
MSWH1_0017 CDS
T03851
Name
(GenBank) Replication factor A (ssDNA-binding protein)
KO
K07466
replication factor A1
Organism
mef
Methanosarcina sp. WH1
Pathway
mef03030
DNA replication
mef03420
Nucleotide excision repair
mef03430
Mismatch repair
mef03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSWH1_0017
03420 Nucleotide excision repair
MSWH1_0017
03430 Mismatch repair
MSWH1_0017
03440 Homologous recombination
MSWH1_0017
03460 Fanconi anemia pathway
MSWH1_0017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mef03000
]
MSWH1_0017
03032 DNA replication proteins [BR:
mef03032
]
MSWH1_0017
03400 DNA repair and recombination proteins [BR:
mef03400
]
MSWH1_0017
Transcription factors [BR:
mef03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
MSWH1_0017
DNA replication proteins [BR:
mef03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
MSWH1_0017
DNA repair and recombination proteins [BR:
mef03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
MSWH1_0017
MMR (mismatch excision repair)
MSWH1_0017
DSBR (double strand breaks repair)
HR (homologous recombination)
MSWH1_0017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
Ssb-like_OB
REPA_OB_2
OB_MEIOB_N
TriTu
DUF5402
POT1PC
RecG_wedge
SHLD2_OB1
GTP_EFTU_D2
Motif
Other DBs
NCBI-ProteinID:
AKB20288
UniProt:
A0A0E3KW14
LinkDB
All DBs
Position
complement(18185..19639)
Genome browser
AA seq
484 aa
AA seq
DB search
MTDIDTIYEKLSHVISKEDFLQRTQEKVENMGGLCDETMAAMLVANELGFSDAGRDSVKI
ESITPESGPVNFVARIVSVFDIKEFTRNDGTIGRVGNLIVGDETGKVKLTLWDNMADLIK
NGKVKVGQTVQISGYAKQGYSGVEVNIGNNGVLTESEEEVDVASSSQNIKDIKDGMGDLN
LTGKVLEVSEVKTFQRKDGSSGRVGNLMLGDSTGTIRVTLWDEKTDFLNQIEYGDTVELI
SAYARENAFTQKVELQIGNRSIIKKSEKEVEYKEEFTPIADIKADMNNINVSGRILDISE
VRIFEKKDGSTGRVANILMGDSTGKIRLTIWDEKTDCLDEINFDDTVEVLNAYSRENTFS
QQVELSLGARGIIQISEKKVEYREKFTDITDIVPGESYSVQGKVAEIGELREFEKEDGTE
SVVANLQLKDETGSIRLTLWGEQAYVIEDLDIDSEIQIIDAYAKYGLNEEIELSVGNRSR
VIIL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatattgacactatttatgagaagctcagccatgtcatcagtaaagaggatttc
ctgcagcgtacacaggaaaaggtcgagaacatgggagggctttgtgatgagacgatggct
gcaatgctggttgccaatgaactgggattctcggatgcaggtagagacagtgtgaaaata
gaaagtattacacccgagagcggacctgttaattttgttgcaagaattgtttcggttttt
gatatcaaggagtttacccggaacgacggtactataggcagagttggaaatctgatcgtc
ggagacgaaaccggaaaagtgaagttaaccttgtgggacaatatggcagacctgattaaa
aacggaaaagtaaaggtagggcaaaccgttcagatcagcggctatgcaaagcagggctat
tctggagtggaagttaacatcggcaataatggagttctgaccgaaagtgaagaggaagtt
gatgttgcttcgagcagccagaatataaaggacatcaaagatggaatgggagacctcaac
cttacgggaaaagtgctggaggtttctgaagtcaagactttccagcgcaaagacggcagc
agtgggagagttggaaacctgatgcttggagattccacaggcacaatcagggtaacgctc
tgggacgaaaaaaccgattttttaaaccagattgagtacggggacactgttgaactgatc
agtgcttacgcccgtgaaaatgcctttacacagaaagtagagctgcaaataggaaaccga
agcataatcaagaaaagcgaaaaagaagtagaatataaagaagagtttacccctattgca
gatataaaagccgacatgaataatatcaatgtttccggaagaatacttgatatctcagaa
gtccgaattttcgagaaaaaagatggatccaccggcagggttgcaaacatccttatgggt
gattctacaggcaaaataaggcttacaatctgggacgaaaaaaccgattgtcttgacgag
attaatttcgatgatacagtggaagtcctcaatgcctattcccgggaaaacacattcagc
cagcaggtggaactcagcctgggagccagagggataattcagataagtgaaaaaaaggtt
gagtacagggagaaatttactgacatcaccgacattgtcccaggagaaagttattctgtc
caggggaaagttgccgaaatcggcgaactcagagagtttgagaaggaggacggaaccgaa
agtgtggttgcaaacctgcagctcaaagacgaaacaggcagtatccgattaactctctgg
ggagaacaggcctatgttatagaggacctggatatagactctgagatccagatcattgac
gcttatgccaaatatgggttgaacgaagaaattgaacttagcgttgggaacaggagtaga
gtgattattctctga
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