Methanosarcina sp. WH1: MSWH1_0240
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Entry
MSWH1_0240 CDS
T03851
Name
(GenBank) DNA repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mef
Methanosarcina sp. WH1
Pathway
mef03022
Basal transcription factors
mef03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mef00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MSWH1_0240
09124 Replication and repair
03420 Nucleotide excision repair
MSWH1_0240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mef03021
]
MSWH1_0240
03036 Chromosome and associated proteins [BR:
mef03036
]
MSWH1_0240
03400 DNA repair and recombination proteins [BR:
mef03400
]
MSWH1_0240
Enzymes [BR:
mef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
MSWH1_0240
Transcription machinery [BR:
mef03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MSWH1_0240
Chromosome and associated proteins [BR:
mef03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
MSWH1_0240
DNA repair and recombination proteins [BR:
mef03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MSWH1_0240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
Zot
PhoH
HBB
HK
ATPase
AAA_34
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AKB20511
UniProt:
A0A0E3L3X1
LinkDB
All DBs
Position
270588..272990
Genome browser
AA seq
800 aa
AA seq
DB search
MNKFRWTVQGSGNRRGIRVKRMMQKNGYMRYFTKKSCYPNQAEAMEKIHSALLQEKIVLF
EGACGTGKTLSSLAPALHVGKKLNKVVIIVTNVHQQMVQFIHETRDINRDNSIKTIVFKG
KTSMCPENLDYEECKLKGENTYDLLEFEREVSSKEKELKDASEKHKRTKDPALYALRNEL
EKEIEEARKKAQSLRNHSCPKLYEVLKFEGNEFSSWLFSDVRSPEDVMEYAEDRGMCGYE
LLKKELKNTELLICNFHHVLNADIFMTLLKWLEKDPEDIILIFDEAHNIEASARSHSSVM
LSEISIEKALSEVGEIPEPDNSSAFGGGFGSGSGIPLDQDYASRLYAKRLFSCLLTSIRD
TYDSKLKFGERNRLGKHWQDIQISDPYERLDVLKVRFLRDAKKEGFADEEQVLTRLREIG
EFGGRLEEIYAENYKKGLLSVPKRSQIRYVADFLSSYLVLSDRQNYYPILNMRRDFKSDR
VIGRLELFTCIPKNVTQPLLDSVYSAVLMSATLRPFEMTKSSLGITREIEEITYGTTFPQ
ERRLTLAVSVPPLFAKNRDSPETLESLKEALLAAIAASSGNVVVYFQSYAEALRYTKLLG
PELTIPIFLDEVGVSAQEIRQEFFKIGEQGGKALLITYLWGTLSEGVDFRDSRGRTVIIV
GVGYPALNDRIKAVESAYDTVFNFGDGWEFAVQVPTIRKVRQAMGRIVRSPGDFGVRILL
DARYQGSQMRKLGKFSVFGYFPPEESREFLDVAPRDVGNLVEEFFANIVPCSPEKKENDK
KEPKSPASGRLEFGNLAEKL
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgaataaattccgatggactgttcagggttcaggaaaccggagaggtatcagggttaag
cgtatgatgcaaaagaacggatacatgcgatattttacaaaaaaaagctgctacccaaac
caggcagaagccatggagaagattcattcggctctcctgcaggaaaaaatcgtgcttttt
gaaggggcgtgcgggacaggcaagaccctgagttcccttgctcctgctcttcatgtgggg
aagaaactcaataaggtcgtaatcatagtcacaaatgtccaccagcagatggtccagttc
atccatgagacccgggacatcaacagggacaacagtataaaaacaattgttttcaagggc
aagacctccatgtgtcccgagaacctcgactatgaggagtgtaagctaaaaggggaaaac
acctatgacctccttgagtttgagagggaagtctcttcaaaggaaaaagaactcaaagat
gcctcggaaaaacacaaacggacaaaagaccctgccctctacgccctcaggaacgagctt
gaaaaagaaatcgaggaagcccgaaaaaaggcgcagtccctgagaaaccactcctgccca
aagctttatgaggtcctcaagttcgagggaaatgagttttcttcctggctcttttcggat
gtaagaagccctgaagatgttatggaatatgcggaagaccggggcatgtgcgggtatgag
ttgcttaaaaaggagctcaaaaacacagaacttctgatctgcaatttccatcatgtgctc
aatgctgatatcttcatgactctccttaaatggcttgagaaggaccctgaagacatcatt
cttatctttgacgaagctcacaacatcgaggcttcagcccgttcccattcctccgtaatg
ctttccgaaatatccattgaaaaagctctttctgaggtaggggagattcctgagcctgac
aattcttctgcattcgggggaggtttcggatcaggctccggaatccctcttgaccaggac
tatgcctcccgactctacgcaaaaaggcttttttcctgtttactgacctctataagagat
acttatgactctaagttgaagttcggggagaggaacaggcttggaaaacactggcaggac
attcagattagtgatccttatgagcgcctcgatgtcctgaaagttcgttttttgcgggat
gcaaagaaagaagggtttgcagatgaagaacaggtacttaccaggctgcgggaaattggg
gaatttggaggcaggctggaagaaatttatgctgaaaactacaaaaaagggcttctttct
gttcccaagcgttcccagatccgttatgttgcagattttctttcttcttatcttgtactt
tcggatcggcagaactattacccgatcctgaacatgcgcagagactttaaaagcgacagg
gtaatcggcaggcttgaacttttcacctgtattcccaagaatgtgacccaacctttgctt
gattccgtttattcggcagtgctgatgtcggctacccttcggcctttcgagatgaccaaa
tcctcactgggcattacccgggaaatagaagaaatcacctatgggactactttcccacag
gaacgaaggcttactcttgcggtttcagtccctcctctctttgcaaaaaacagagacagc
ccggaaactctggaaagtttgaaagaagcgcttctagctgccattgctgcatcgtccgga
aacgtggtcgtttatttccagagttatgcggaagccctccgctatacaaaactccttggg
cccgagcttacgatcccaattttccttgatgaagtcggggtctcagcccaggagatcagg
caggagtttttcaaaataggtgagcagggaggaaaagctttgctcattacctatctctgg
ggaacattgagtgaaggtgttgatttcagagactcccgcggcaggaccgtgatcattgta
ggcgtggggtacccggctctgaatgacaggataaaagctgtagagtcggcatatgacacg
gttttcaattttggagatggctgggagtttgcagtccaggtgccaacaatcaggaaggta
aggcaggcaatgggaagaattgtccgttctcctggagatttcggggtaagaatcctcctt
gatgctcgctaccagggctcccagatgcgcaagctgggcaaattttcggttttcggatac
ttccctcccgaagagagcagagagtttctcgatgtagctccaagggatgtgggaaacttg
gtagaagagttttttgcaaatatagtgccctgttcccctgaaaaaaaggaaaatgataaa
aaggagccgaaatctccggcttcaggtcggctggagttcggaaaccttgcagaaaagctc
tga
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