KEGG   Methanosarcina sp. WH1: MSWH1_0386
Entry
MSWH1_0386        CDS       T03851                                 
Name
(GenBank) Flap structure-specific endonuclease
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
mef  Methanosarcina sp. WH1
Pathway
mef03030  DNA replication
mef03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:mef00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSWH1_0386
   03410 Base excision repair
    MSWH1_0386
   03450 Non-homologous end-joining
    MSWH1_0386
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mef03032]
    MSWH1_0386
   03400 DNA repair and recombination proteins [BR:mef03400]
    MSWH1_0386
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mef04147]
    MSWH1_0386
DNA replication proteins [BR:mef03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MSWH1_0386
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MSWH1_0386
DNA repair and recombination proteins [BR:mef03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSWH1_0386
Exosome [BR:mef04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   MSWH1_0386
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc HHH_5
Other DBs
NCBI-ProteinID: AKB20657
LinkDB
Position
complement(448496..449512)
AA seq 338 aa
MGTDIGDLLQKRKIELTDLSNRVIAIDAFNTLHQFLSIIRQRDGSPLVNSSGKVTSHLSG
LLYRTASLVEAGIKPVFVFDGKPPDLKSETLSRRKEVRETSLEKWENAKAEGNLEAAHKY
AQASSKVDQTIVEDSKYLLGIMGIPWIQAPCEGEAQAAHMVIKKDADCVASQDYDSFLFG
APSVVRNMTVTGKRKLPGKNVYVDVELEMIDLDETLGVLGVNRDQLIDIAICVGTDYNKG
LEKVGPKTALKLIKKHGDIHAVLREKGVEIEGLDNIKELFTHPDVTDDYKIKWGKPDSEK
LINFLCGENGFSVDRMEKAIERLKAASGARQKTLDQWF
NT seq 1017 nt   +upstreamnt  +downstreamnt
atgggcacggacataggagatcttcttcagaaaagaaaaatagagcttactgacctctca
aaccgggtgattgcaattgatgcatttaacacccttcaccagtttttgagcattatccgc
cagagggacggaagtcctctggttaattcaagcggaaaagtgacctcccacctctccggc
ctgctctacaggacagcaagcctggttgaagccggaatcaaacctgtattcgtttttgac
ggcaaaccccccgacctgaaatccgaaaccctgagccgaagaaaagaagtaagggagact
tcactggagaaatgggaaaatgcaaaggcagaagggaaccttgaagctgctcataagtat
gctcaggcgtcttcaaaggttgaccagaccattgttgaagattccaaataccttctcgga
ataatgggtattccctggatacaggccccctgtgaaggagaggcacaggctgctcatatg
gttattaaaaaggatgcagattgtgttgcttcccaggactatgattccttccttttcgga
gccccgagtgttgtccgtaacatgacggtaactggaaaacgcaagctccctggaaagaat
gtatacgttgatgttgaacttgaaatgatcgacctcgatgaaaccctcggggttctggga
gttaacagggaccaacttatcgatattgcaatctgtgtaggcacggattataacaaaggc
ctggaaaaagtgggtcctaaaacagcccttaaactaattaaaaagcatggagacatccat
gccgtgctccgggagaagggagtagaaatcgaagggctggacaatataaaggaacttttt
acccatcctgatgttacggacgactacaaaatcaaatggggtaaaccggattccgaaaaa
ctcatcaacttcctctgcggggagaatggcttctctgtagacaggatggaaaaagctata
gaacgccttaaagcggcttcaggtgcaaggcagaaaacccttgaccagtggttctaa

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