Methanosarcina sp. WH1: MSWH1_0472
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Entry
MSWH1_0472 CDS
T03851
Name
(GenBank) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
mef
Methanosarcina sp. WH1
Pathway
mef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSWH1_0472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mef03019
]
MSWH1_0472
Messenger RNA biogenesis [BR:
mef03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSWH1_0472
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MSWH1_0472
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
OB_RRP5_4th
ECR1_N_2
HypA
zf-C3HC4_3
Motif
Other DBs
NCBI-ProteinID:
AKB20743
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Position
544183..545241
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AA seq
352 aa
AA seq
DB search
MIRIRKNKTTRKKLTGPGEGKSIDEKSVPPTGENRDQSRDQFKSQPRDQSRGSQRDQSRG
SQRDQSRGPQRDQSRGPQRDQSRGPQRDQSRGPQRDQSRSSQRDQSRGPQRDQSRDHFKG
QSRDQFKGDPNKKRRFPYPKKTPRDRKEMSGFRSSVGETVISEEELEKGDFVLPGELVGT
TEEFKPGPGAAVIAGDIYSTATGNVLIDRKARVVSVKPNTLTPNILKVGDIIYGRITDVR
ESGAMVEVAGIEGKENREIVGSRPGDIHVSNVRDSYVKRLLDEFRPSDIIRARVIEVDRM
RLTTAEDSLGVVKAYCSNCRGELVPEGKKLKCPVCNMTETRKISTGYGKGIR
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgattagaatccgaaaaaataagactactaggaaaaaattaacaggtcctggtgaagga
aagtctattgatgaaaaatcggtcccgccaactggcgaaaacagggatcagtcaagggat
cagtttaaaagccagccccgagatcagtccaggggctcgcaacgagatcagtccaggggc
tcgcaacgagatcagtccaggggcccgcaacgagatcagtccaggggcccgcaacgagat
cagtccaggggtccgcaacgagaccagtccaggggtccgcaacgagaccagtccaggagt
tcgcaacgagaccagtccaggggtccgcaacgagaccagtcccgagatcatttcaagggt
cagtcccgagaccagttcaagggtgatcctaacaaaaagagaaggttcccatatcctaag
aaaactccccgagataggaaggaaatgtcaggtttcaggtcttctgtcggagaaaccgtg
atatctgaagaagaacttgaaaaaggagattttgttcttccgggagaacttgttggtact
acggaggaattcaagccaggtcccggagcagcagtaattgccggagatatttattctact
gccacaggcaatgtactcattgacagaaaagccagggtggtctcggttaagccaaatact
cttactccaaatattcttaaagtcggggacataatttacggtaggatcactgacgtccgc
gagtccggggcaatggtggaagttgcaggaattgaaggaaaagaaaacagggaaattgtc
ggatcaaggccaggagatatccacgtttcaaatgtaagggactcatatgtcaagagactg
ttagatgagttcaggccgtctgatattataagggccagagtcattgaagttgacagaatg
cgccttaccacagccgaagattctcttggagttgtaaaagcttactgctcaaactgcaga
ggcgaactcgtgccggaagggaaaaagcttaaatgccctgtctgcaatatgactgaaacc
cgtaagatctcaaccgggtacgggaaaggaataaggtaa
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