Methanosarcina sp. WH1: MSWH1_1119
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Entry
MSWH1_1119 CDS
T03851
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mef
Methanosarcina sp. WH1
Brite
KEGG Orthology (KO) [BR:
mef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mef03032
]
MSWH1_1119
03400 DNA repair and recombination proteins [BR:
mef03400
]
MSWH1_1119
Enzymes [BR:
mef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MSWH1_1119
DNA replication proteins [BR:
mef03032
]
Prokaryotic type
DNA Topoisomerases
MSWH1_1119
DNA repair and recombination proteins [BR:
mef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MSWH1_1119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
HHH_5
Cdd1
DNA_pol_lambd_f
DUF4332
IMS_HHH_1
SAM_BAF
TfoX_C
Zn_ribbon_RPB9
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AKB21390
UniProt:
A0A0E3NPK1
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Position
complement(1334779..1337034)
Genome browser
AA seq
751 aa
AA seq
DB search
MHLIVTEKNIAARRIAAILAPKSPKKERVSGVDVYRYEIGSGENRQETAVIGLSGHIVGI
DFPKEYNNWQKVDARALVDAEITTTPINRKIVTALKSLGKEADRVTIGTDYDREGELIGV
EALNIIKQVNPDVPFDRVRYSAITPKAIDAAFADPTNVDFNLADAGHSRQVIDLVWGAAL
TRYISLAAGRLGKMFLSVGRVQSPTLSLIVDREKERNIFVPTPYWEIHAELETTSKETFS
AQHSTRRFLDKEEAAKVFKKLGKKAELKEIEKGTKIDQPPTPFNTTGFISAANSIGLSPS
NAMRIAESLYTNGYISYPRTDNTVYPDTLDLRAQIEIFKEGPFKEYANILLEKAELVPTR
GKKETTDHPPIYPASLAKKTNLKEEEWKVYELVVRRFFATFAEPSTWETMRLKIEINEEE
FRANGARLLEHGWRWYYPYNAPEDRLFPELREGDSLKVIKKEMLDKETQPPGRYGQGRLI
NIMEELGLGTKATRHEIISKLYSRAYIHGNPVQPTNTSFAVMDTLEKYSPTITKPDMTKL
LEENMDLIAEGKIKEDAVLEESREMLKQVFSELDKNRDNIIESLQAGLREDKIIGTCPSC
GNELMIRRSKRGSRFIGCSNYPDCTFSLPLPKSGQIIVTDKSCEVHGLHHIRIINQGKRA
WDLGCPQCNFIEWQKTQQEEQAKKPKKERPKSIKDLEGVGKATAGKLEEAGIKSIEALME
ADAVELAKTIKVTVKKIKNWQISCGSTVKDL
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttatcgtaacggaaaaaaatatagcagcaaggaggatagctgcgattctggct
ccaaaaagtcctaagaaggagagagtcagcggagtagacgtataccggtacgaaattgga
tccggcgaaaacaggcaggaaactgcagtaatagggctttccggccatattgtcgggata
gattttccaaaagagtacaacaactggcagaaagttgatgccagagccctggtagacgct
gagataacaacaactccaattaaccggaaaatagtgactgccttaaagagcctggggaaa
gaggcagacagggtcacgattggaactgactacgaccgggaaggagaactgataggagtc
gaagctctgaacatcataaagcaggtgaacccggatgtcccttttgacagggtccgttac
agtgcaataaccccgaaagcaattgatgcagcattcgcagatcctacaaacgttgatttt
aaccttgcagatgcagggcactccaggcaggtaattgacctggtctggggcgcagccctt
acccgttatatttcactggcagctggaaggcttgggaaaatgttcctctcggtgggaagg
gtgcagtcaccgaccctctcgcttatagttgacagggaaaaagagaggaatatctttgtc
ccgactccttactgggagatccatgccgaacttgaaaccacgtcaaaagaaaccttttcc
gcccagcactcaacccgccgcttcctggacaaagaggaagctgcaaaggtgttcaaaaaa
ctggggaaaaaagcggaattaaaggaaatcgaaaagggaacaaagatcgaccagcctcct
actccttttaatactacgggctttatcagcgcggcaaactcaatagggctcagcccttca
aatgccatgcgcatagctgaatccctttatactaacgggtatatttcataccccagaaca
gacaatactgtttatcccgatactctggatttgagggctcaaattgagatttttaaggaa
gggccttttaaggagtatgcaaacatcctgcttgagaaagccgaacttgtccccactcgc
gggaaaaaagaaaccacagaccaccctcctatctatcctgcgtccctggcaaagaaaacc
aatctaaaagaagaggaatggaaggtctacgagcttgtggtcaggcgcttttttgcaacc
tttgccgagccgagcacctgggagaccatgcgcctgaaaatcgagataaatgaggaagag
ttcagagcaaacggagcaaggctgctggaacacggctggcgctggtattatccctacaat
gcccctgaagacaggctgtttccggaactcagggaaggagattccctgaaagtaataaag
aaagagatgctggataaagaaacccagcccccaggacgctatgggcagggcaggctaatc
aatataatggaagagctcgggctcggtacaaaagccacccgccacgaaataatcagcaaa
ctctattccagggcatatatccacggaaacccagtacagcccacaaacacttcttttgca
gtaatggacacccttgagaagtattctcctacgattacaaaaccggacatgacaaagctg
cttgaagaaaatatggacctgattgcagagggcaaaataaaggaagatgcagttcttgaa
gagtccagggagatgctcaagcaggtcttttcggaacttgacaaaaatagggacaatatc
atagagtccttgcaggcaggtctcagagaggataaaatcataggcacctgcccctcatgc
ggaaacgagctcatgatccgccgttcgaaaagggggagccgtttcataggctgcagcaat
taccctgactgcaccttctcactacctctaccaaagagtggccagattattgtcaccgac
aagtcctgtgaggttcacgggttgcaccatatccgcataatcaatcagggaaaacgggcc
tgggaccttggctgccctcagtgcaatttcatcgaatggcagaaaacccagcaggaagag
caggccaagaagccgaaaaaagaaaggcccaaatccattaaagatctcgaaggtgttgga
aaagcaactgcaggaaaactcgaggaagcaggaataaaaagcatagaagccctgatggaa
gctgacgctgtcgaacttgcgaaaaccataaaggttaccgtaaagaagattaagaactgg
caaatctcatgcggcagcacagttaaggacttatga
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