Methanosarcina sp. WH1: MSWH1_1997
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Entry
MSWH1_1997 CDS
T03851
Name
(GenBank) Ribonuclease PH
KO
K11600
exosome complex component RRP41
Organism
mef
Methanosarcina sp. WH1
Pathway
mef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSWH1_1997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mef03019
]
MSWH1_1997
Messenger RNA biogenesis [BR:
mef03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSWH1_1997
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MSWH1_1997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AKB22268
UniProt:
A0A0E3KY67
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Position
complement(2448820..2450472)
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AA seq
550 aa
AA seq
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MSNKPENLILITDDGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPR
EVHPRRSQRPDSAVVRYKYNMASFSVEDRARPGPSRRSIEISKVSRDAFEPVIMAELFPK
TAIDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVEGQIVLDLNKEED
NYGEADFPVAMTQDGEITLVQMDGHLTPEEIKKGLELVKKGCKEILEIQQAVLRKKFETP
VEDTTEETAETEKEVKKEETIPSPKSAPETAVVKEIEVKEEFGAEASEEPSADDVLSSEV
IPDLEEELEEDIEEEFKEELEEDIEEEFKEELEEDIEEELEEDIEEEPEEDIEEEPEEDI
EEELEEDIEEELEAEEEEGDFEDEEKAGEEKFEAESEEDLEEDLEEDLEEDLEENLGEEL
EEEEVLEEKAEVEASFEGSPELKGFEEIEARFEKEAASREAEEEMGFEPEAEESIEEDLS
FEEEAEVEETEAVSEETIESETDVEPESETGEVSTEAVEAEEEPEEEKSEGPWKVVKDPS
EADTRGEKNE
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgagtaataaacctgaaaacttaatattaatcactgacgatgggctgcgccttgatggg
agacgtgcagatgaaataaggcccatgaaaattgaggtcggcgtactttcgcgagccgac
ggttcatgttatcttgaatggggcaggaataagatcctggtaggtgtgttcggacccagg
gaagtccatccccgccgcagccagcgcccagattcggcagttgtccgttacaagtataat
atggcatcattctccgtggaagaccgtgctcgcccagggcccagcaggcgaagcatcgaa
atctcaaaggtttccagggacgctttcgaacctgtgattatggctgagctgtttccgaag
acagcaattgatattttcgtggaagtgctccaggccgatgcagggacaaggacagcagct
attaatgcttcaagtatagctcttgcagatgccggaattcccatgaagggtcttattacc
tcctgtgctttcggaaaggttgaggggcagattgtacttgacctcaataaggaggaggac
aactacggagaggctgacttccctgtagcaatgacccaggacggggaaatcactcttgtc
cagatggacgggcatcttactcctgaagagattaagaaaggccttgagctcgtaaagaaa
gggtgcaaggagatccttgagattcaacaggcagtccttagaaagaagtttgagacccct
gttgaggatacgacggaagaaactgcagaaactgaaaaggaagtcaaaaaagaagagacc
ataccttcccccaagtctgctccggaaacagcagtggttaaagagattgaggtaaaggaa
gaatttggagcagaggcatcagaagaaccatctgcagatgatgtcctttccagtgaggta
atccctgatctcgaagaagagctcgaggaagatattgaagaagagttcaaggaagagctc
gaggaagatattgaagaagagttcaaggaagagctcgaggaagatattgaagaagagctc
gaggaagatattgaagaagaacccgaggaagatattgaggaagaacccgaggaagatatt
gaggaagaactcgaggaagatattgaagaagagctcgaagccgaagaggaagaaggggat
tttgaagacgaagagaaagccggagaagagaaatttgaggctgaatcggaagaagattta
gaggaagatttagaagaggatttagaagaggatttagaagaaaatttaggtgaagaactc
gaagaagaggaagttcttgaagagaaagccgaagttgaagcctcttttgaaggtagtcct
gaactcaaaggatttgaagaaattgaagccaggtttgagaaagaagctgcttccagagaa
gccgaagaagaaatgggtttcgagcctgaagctgaggaatctatcgaggaagatctctcc
tttgaagaagaagccgaagttgaggaaactgaagctgtttcagaagaaactattgaatct
gaaacagatgtcgaacccgagagtgaaaccggagaagtttccactgaagcggtagaggca
gaagaagagcctgaagaagaaaaatccgaaggtccctggaaggtagtaaaagacccctct
gaagccgataccagaggtgaaaaaaatgagtga
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