Methanosarcina sp. WH1: MSWH1_1998
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Entry
MSWH1_1998 CDS
T03851
Name
(GenBank) putative exosome complex RNA-binding protein 1
KO
K03679
exosome complex component RRP4
Organism
mef
Methanosarcina sp. WH1
Pathway
mef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSWH1_1998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mef03019
]
MSWH1_1998
Messenger RNA biogenesis [BR:
mef03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSWH1_1998
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MSWH1_1998
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
ECR1_N
KH_1
RRP4_S1
S1
KH_2
RRP40_S1
Motif
Other DBs
NCBI-ProteinID:
AKB22269
UniProt:
A0A0E3NRZ0
LinkDB
All DBs
Position
complement(2450550..2451332)
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AA seq
260 aa
AA seq
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MDKKIVIPGDLLSEEMKKAGYGTYIKNNKIYSSFCGIENLKEDKVGVIPLAGAYIPSVND
VVIGIVIVVTPSNWILNIAAPYDGLLHVSEYPRRVESRDMPEIMNVGDSAILRVKDVDSS
MKVELALRDPSLHKLKTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI
DGKDEDVELLSKAIRKIELEAQRTGLTDRIYNFLKDERIKQKESKPITFFQNENKGATTG
KEDHSEDIYRKIDVLLDSKN
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaaatagtgatccctggtgacctgttatccgaggaaatgaaaaaagccgga
tacgggacgtatatcaagaacaacaagatctattcttcgttttgtggtattgaaaacctc
aaagaggataaagttggagtgatcccacttgcgggagcgtatatcccctcagtgaatgat
gtggtgatagggatcgttattgtggttactccatccaactggatactgaatattgcagct
ccttatgatggtctgctccatgtatccgaatatccgagaagagtcgaatcccgagatatg
cctgaaatcatgaacgtgggtgactctgcaatcctcagggtaaaagatgtagacagctcc
atgaaagtcgagcttgccctgagggatccgagccttcataaactcaaaacaggccagatt
gttgaagttgagcctgtaaaagtcccccgtgtaataggacacggcggttccatgatctcc
atgttgaagaaagagacaaactgcagcattttcgtaggccagaatggcagaatatggatc
gatggaaaggacgaagatgtagaacttttgagtaaggctattcggaaaatcgaacttgaa
gcccagcgtaccggattgacagaccggatctacaattttttgaaagatgaacggattaaa
cagaaagagtccaaacctattacgttttttcaaaatgagaataaaggcgctactacagga
aaggaagatcattccgaagatatttacaggaagatcgatgtactgctggactcaaagaat
tga
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