Methanosarcina sp. WH1: MSWH1_1999
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Entry
MSWH1_1999 CDS
T03851
Name
(GenBank) Shwachman-Bodian-Diamond syndrome protein
KO
K14574
ribosome maturation protein SDO1
Organism
mef
Methanosarcina sp. WH1
Pathway
mef03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
mef00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
MSWH1_1999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mef03009
]
MSWH1_1999
Ribosome biogenesis [BR:
mef03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
MSWH1_1999
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SBDS_N
SBDS_domain_II
SBDS_C
EFG_C
MIase
Motif
Other DBs
NCBI-ProteinID:
AKB22270
LinkDB
All DBs
Position
complement(2451344..2452036)
Genome browser
AA seq
230 aa
AA seq
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MVSLDEAVTARLKRGSKHFEVLVEPEGALAYKRGEEINLEDILAVETIFEDANRGDRAAE
SDIINSFETTDPFKIAAVILKSGELQLTADQRKRMLEEKKKKVIYTISRNAINPQTRAPH
PPARIERAMEEARVHIDPLKSVDQLVAITMKAIRPLIPIRFEEINIAVKIPPEYAPKAYG
DISKAGSITKEEWQHDGSWVAIVRIPAGVQTDFYALINHLTKGEAQTKLL
NT seq
693 nt
NT seq
+upstream
nt +downstream
nt
atggtgtccttggacgaggcagtgactgcccggcttaaaagaggcagcaaacatttcgaa
gtactggtcgagcccgaaggggctctggcctataagcgaggagaggaaataaacctcgaa
gacattctggcagttgaaactatcttcgaagacgcaaacagaggggaccgggcagcagag
tccgatataatcaactcttttgagacaaccgacccctttaagattgctgccgtgatcctg
aaaagcggagagcttcagcttaccgctgatcagagaaaacgaatgcttgaagaaaaaaag
aaaaaggttatctataccatttccagaaatgctataaaccctcagactagagcaccccac
cctcccgcaagaatagaaagagcgatggaagaggcaagggtgcacatagaccctttaaaa
agcgtagatcagctggtagctattacaatgaaagccattcgcccgcttatcccgatacgc
tttgaagaaatcaatattgctgtgaaaatccctcccgaatatgctcccaaagcatacgga
gatatttctaaagccggaagcattacgaaagaagaatggcaacatgacggctcatgggtt
gcaatagtgcggattcctgcgggagtccagactgatttttacgctcttataaatcatctc
acgaagggagaggctcagacgaaacttttataa
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