Methanosarcina sp. WH1: MSWH1_2223
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Entry
MSWH1_2223 CDS
T03851
Name
(GenBank) Exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
mef
Methanosarcina sp. WH1
Brite
KEGG Orthology (KO) [BR:
mef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mef03400
]
MSWH1_2223
DNA repair and recombination proteins [BR:
mef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MSWH1_2223
Archaeal homologous recombinant proteins
MSWH1_2223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_21
AAA_15
AAA_29
DUF4201
MUG113
zf-C2H2_aberr
ABC_tran
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AKB22494
UniProt:
A0A0E3NSC5
LinkDB
All DBs
Position
complement(2731423..2734647)
Genome browser
AA seq
1074 aa
AA seq
DB search
MKLKNLYIENIRSYKKLDFTFEDGVTVISGVNGSGKSSLLEACFMGLFGSKILSKDFVLA
DIIFKGAENAKINLGFEHLGREYLIEQAFRYSSKTENASSSKCVLYADGENIVDQATRTY
EEVCSLLNMDEEAYRNCAYIRQGEIDVLINAKPKDRQRMIDDLLQLGKLEEYRERAGYAK
TAVRRLERDAKNSFLGVKAEIEGLESTEPVAALNRLRQKVKETDVVLNELNDKKEFAAAR
KGELDIKIADYRERLQEIEALKQAIRKSQEDKAGCFKEKETFSGEVREQRRILLELGEEN
AGLREEYGFGDLEIESLLLGKEKEESFAREKVNAVSKELALLQKEEETGIQALHELENEK
AEAERTLIECRASIGAANKEIEGHRINIRKFEQENKRLREKAGFKEGSGAADEIVQVIKE
LEEKESLLRDRRNEVSTKLGLALKEKETGDLNLAELEKELQNSRAALGKGNAEIEALEKE
LRDNSKAVLEVQEQKSEVFEGFKELGFAEDQLENLEDFSELLLENKNRLHGREKELEATL
RELEKSLRKNRELLAEGKCPTCGQELKGSEIACTAEECELKKETFASELADIKLQNVELE
KKLTRLKDAKKLVKRISDYDIEIEKLLAKAKASEKLIETHRARTEEDSLKLESLAKRKQE
LEAIMSQLLPEIKALKDQEEKAQKAHIEGEIALREAKAFERKLAENASEIEALNGKIRTS
LALIENYGQRLGELSEKLKAFAGKEAISKEKLKALELALEAMRKKEDEAKRAHAECEKLL
GQAKKLQANLLRMENLKHKISELETAIRNLAEKVGFFDREILERSERIRQLKEKLEGNRL
EELQEKRAQFEQAQVNIIEKIREVTAEKDVLLKEIGMTENSLKRLRELKEELKALENRRL
YLEAVYSNAEELENTYLRVRADMRARNIGALSVLLNEMFSFMYTNNAYSHIELDPEYNLT
VYRKDGTPLEPKLLSGGERAIFNLVLRCAIYRLLALGFAGDQAEGLPPMILDEPTVFLDR
GHIQQLLKLIDMMRSIGVGQIIVVSHDDSLIDSADHVFQVEKDPLTNMSSITRL
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
gtgaagctgaaaaatctgtacatagaaaatatccggagctacaaaaagctggacttcacc
ttcgaagacggagtgacagttatttccggggtaaacgggagcgggaaatcaagcctgctc
gaagcctgcttcatggggcttttcgggagcaagatcctttcaaaggactttgtgcttgcg
gacataatcttcaaaggagctgagaatgcaaaaatcaaccttggctttgaacatctcggg
cgggaatatcttattgagcaggctttcaggtactcttcgaaaactgaaaatgcttcaagc
tcaaagtgcgtgctctatgctgacggggaaaatattgtcgaccaggcgacccgcacctat
gaagaggtctgttccctcctgaatatggatgaagaggcatacaggaattgtgcttacatc
cggcagggggaaattgacgtgcttatcaatgcaaagccaaaggacaggcagcgcatgatt
gacgacctgctgcagctcggaaagcttgaggagtaccgcgaaagggcaggctatgcgaaa
acggcagtcagaaggcttgagagggatgcaaaaaacagctttttgggtgtgaaagccgaa
atcgaagggcttgaaagcaccgaacccgttgcagctctcaacaggctcaggcaaaaagtg
aaagaaactgacgttgtcttaaacgagcttaatgacaaaaaagaatttgcagctgcccgt
aaaggagaactcgatatcaagattgcagactacagggaacgcctgcaggaaattgaggct
ttgaaacaggctatccgtaagtctcaggaggataaggctggctgttttaaggaaaaggaa
acattttccggggaagtgcgggagcaaaggcgtattttgctcgaactcggggaagaaaat
gccggtttgagagaagaatatggttttggagaccttgaaattgaatctctgcttctgggc
aaggaaaaagaggagtcttttgccagggaaaaggtaaatgccgtatcaaaagaacttgct
cttctccagaaagaagaagaaaccggcatacaggcattacatgagcttgaaaatgagaaa
gctgaggctgaacgcaccttgattgaatgcagggcgagtatcggggctgcaaataaggaa
attgaagggcacagaataaatataaggaagttcgaacaggaaaacaaaaggcttagagaa
aaagcaggctttaaagaaggctccggggctgctgatgaaatcgttcaggtgattaaggag
cttgaagaaaaagaaagccttctcagggaccggagaaatgaagtttcgacaaagcttggg
cttgccctcaaggaaaaagagaccggggacctgaatcttgccgagcttgaaaaggaactg
caaaactccagggctgcgcttgggaaaggaaatgcggaaatcgaggctcttgaaaaggaa
ctcagggacaactcaaaagcagtactggaagtccaggagcagaagtccgaagtttttgag
gggttcaaagaactaggttttgccgaggaccagctagaaaacctggaggatttcagcgag
cttttgctggaaaacaaaaacaggttgcatgggcgggaaaaagagcttgaggctactcta
agggaacttgaaaagagcctccgtaaaaaccgggaactgcttgccgaggggaagtgccct
acctgcgggcaggaactcaaagggtcagaaattgcatgcacagccgaagaatgcgagctg
aaaaaagagacttttgcctcggaacttgcggacataaaactccagaatgtggaacttgag
aaaaaactcacccggctcaaggacgcaaagaagctagtaaaacgaatctcggattatgat
attgagattgaaaaactcctggcgaaagcaaaagcctccgagaaactgatagagacacac
agggctcggacagaggaagattccctcaagctcgagagccttgctaagcgaaaacaggaa
cttgaagccataatgagccagctccttcctgaaattaaagctctgaaggatcaggaagag
aaagctcaaaaagcacacattgaaggtgaaattgctcttcgcgaggcaaaagcttttgaa
agaaagcttgccgaaaacgcctctgaaattgaagcccttaacggaaaaatccgtacatct
cttgccctgattgaaaattacgggcagaggcttggagagctcagtgaaaaattgaaggca
tttgcaggaaaggaagctatctcaaaagaaaaactcaaagctcttgaacttgcccttgaa
gctatgcggaaaaaggaagacgaagcaaaacgagcccatgcagaatgtgaaaagcttctc
gggcaggcaaaaaagctccaggccaacctgctccgcatggaaaatctcaaacataaaatc
tccgagcttgagactgccataaggaacctggcagaaaaggtggggttctttgaccgtgag
atccttgaacgcagtgagaggataaggcagctgaaagaaaaactggaaggaaacaggctt
gaagaactccaggagaagcgcgctcagtttgaacaggcgcaggtaaatattatagaaaaa
atccgggaagtaactgccgagaaagatgtccttcttaaagaaatcggcatgactgaaaac
agcttaaaacgcctcagggaactcaaagaagaactgaaggctcttgaaaacaggcggctg
taccttgaagccgtatacagcaatgccgaagagcttgaaaacacctatctgcgcgtccgg
gccgatatgcgggcaaggaacataggtgccctttccgtcctcttaaatgagatgtttagt
ttcatgtacacaaacaatgcttactcccatattgagctcgaccccgagtacaatctgacc
gtctacagaaaagacggcactcctctcgagcccaaactcctcagtggaggcgagcgtgca
atcttcaaccttgtcctgcgctgtgccatttacaggctccttgctcttggttttgccgga
gaccaggcagaagggcttccccctatgatccttgatgaacccactgtttttcttgatcgc
gggcacatccagcagcttttgaaactcatagacatgatgcgcagcatcggagtcggccag
atcatagtggtctcccacgacgattccttgatcgattcggcagaccacgtcttccaagta
gaaaaagatccccttaccaacatgtcctcaattaccaggctttga
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