Methanosarcina sp. WH1: MSWH1_2584
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Entry
MSWH1_2584 CDS
T03851
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mef
Methanosarcina sp. WH1
Pathway
mef03410
Base excision repair
mef03430
Mismatch repair
mef03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MSWH1_2584
03430 Mismatch repair
MSWH1_2584
03440 Homologous recombination
MSWH1_2584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mef03400
]
MSWH1_2584
DNA repair and recombination proteins [BR:
mef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MSWH1_2584
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MSWH1_2584
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSWH1_2584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
AKB22855
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Position
3172136..3173533
Genome browser
AA seq
465 aa
AA seq
DB search
MMEAFRKEAGRCAEEITKHRSVHVVSHIDADGLTSAGIICTTLERRNIEYTARFVKQLDE
KVLDTIANENPEFVVFTDLGSGMCEHIKSRGINAVVSDHHQPQGTLDFHLNPHLFGANGS
YELSGSGTTYLLASALGKNIDLSPLAIVGAVGDMQHLKMGQLVGINREILEEGVKGKHLE
FKKDLTLFGKQTRPIYKLLQYSSDPYLPGLTGNEEACIEFLHSLNIRYSHNERWRRWIDL
EISEKQKIVSGLFQYCLKSGIPAYRIERLIGEVYVLLNEREGTEMRDASEFSTLLNATAR
YDHADIGLAVCMGDRENAYENAKKLLAEHRQNLVNGLIYVKENGVTQLDNIQYFDAGSQI
KETIVGIIAGMSSTIVENRNLPIIAFANTEGGIKVSARGTQDLIRKGVNLSEAMSIVSAE
VGGAGGGHDIAAGATIPENAKEEFARKLDLFIGGQIRRKTNSKLR
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagcatttagaaaagaagcaggcaggtgtgccgaagagattacaaaacacagg
tcagtgcacgtagtatctcatatcgatgcggacgggttgacttctgcaggtattatctgc
acaactcttgaacggagaaatatagaatatacagcgcgttttgtaaagcaactcgatgaa
aaagtccttgacactatcgcaaatgaaaaccctgagtttgtagtttttacggacctcgga
agtggaatgtgcgaacatataaaatcccgcgggatcaatgctgttgtttcagaccaccac
cagcctcagggaactctggattttcacctcaacccgcacctttttggggcaaacgggtct
tacgaactgagcggttcgggaacaacttaccttctggcttcagccctcggaaagaacata
gacctttccccacttgccatagtaggggctgtaggggatatgcagcacctgaaaatgggg
caacttgtagggattaacagggaaattctggaggaaggagtaaaggggaagcacctggaa
ttcaaaaaagacctgactctgttcggaaaacagacccgtccaatctacaaacttctgcag
tactcttctgacccttaccttcccggacttacaggaaatgaagaagcttgtatagaattc
cttcactccttgaatattcgctacagccataacgaacgctggagacgctggatagacctt
gagatttcggaaaaacaaaaaattgtctcagggcttttccagtactgccttaaatcaggg
ataccggcatacagaatcgaacgcctgataggcgaggtgtatgtccttctcaatgaaagg
gaaggtacagaaatgagagatgcatcagagttttccactcttctcaatgctactgcccga
tacgaccatgctgacatcgggcttgcagtctgcatgggagacagggaaaacgcctacgaa
aacgccaaaaaactgcttgctgaacacaggcaaaaccttgttaacggactaatatacgta
aaagagaatggtgttacccagctcgataacatccagtactttgatgcaggttcacagata
aaggaaaccattgtaggaataattgcaggcatgagttccacaatagttgaaaacagaaat
ctcccgattattgcctttgcaaacacagagggaggaattaaggtctcagcaagagggacg
caggacctgatccgcaaaggagtaaacctatctgaagcaatgtcaattgtctcggcagaa
gtcggcggtgcaggcggagggcatgatattgctgcaggggcaactattcctgagaacgca
aaagaagaatttgcccgaaaacttgaccttttcataggaggacagattcgacgaaagaca
aattcaaagctcaggtaa
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