Methanosarcina sp. WH1: MSWH1_2737
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Entry
MSWH1_2737 CDS
T03851
Name
(GenBank) Putative Zn-dependent hydrolase in polyisoprenoid biosynthetic cluster
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mef
Methanosarcina sp. WH1
Pathway
mef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSWH1_2737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mef03019
]
MSWH1_2737
Messenger RNA biogenesis [BR:
mef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSWH1_2737
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AKB23008
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Position
3349328..3350671
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AA seq
447 aa
AA seq
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MTEIGIVAVGGYNEMGRNMTAIIIGEDIVILDMGLRLDRVQIHEDVEIDKMHSLELIEMG
AIPDDTIMKEINGTVRAIVCTHGHLDHIGAIPKLAHRYNAPILATPYTAAIIKQQIDSER
KFEVCNRVIPLQAGGTYQVTEDISIEFIRVQHSIIDCVLAAVHTPAGAVLYACDFKLDRT
PTMGEAPDFERFKSLGKEGVIAMITESTNAGRSGKTPSEQIAKDMVRDVLLGTEESDVGM
IITTFASHIARLKAIIEAAEEMGRIPVLMGRSMERYVSAARDVGYLDLPSNVEIYGMRKD
VDRAFKRIMQEGKNKYLPIVTGHQGEPGSILMRVANGETPYAIEPGDKIIFSANVIPSPM
TQANRYALETKLRMKGGRIYDNVHVSGHAYREDHWELLRMVNPEHVIPAHGDMEMHGHYI
EMAEDAGYVLGDTVHLLRNGEVLYIEE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaataggaattgttgcagtcggcggctacaacgaaatgggccgcaatatgact
gccattattataggtgaagatattgtcattctggatatggggctcaggcttgaccgtgtt
caaattcatgaagacgttgaaattgacaaaatgcattctcttgaactaatcgagatgggt
gcaatccctgatgatactatcatgaaagagatcaatgggactgtaagggcaatcgtctgc
actcacgggcaccttgaccacatcggtgcaattccgaagctcgcccacaggtacaatgct
cctatacttgctaccccatataccgcagctatcatcaaacagcagatagactctgagcgc
aagtttgaggtctgcaacagagttattcctttacaagcaggcgggacctatcaggttacg
gaagatatttctatagaattcatcagagtccagcacagtattatcgactgtgtacttgca
gctgtacatactccggcaggagctgttctttacgcctgtgatttcaagctggacaggact
cctactatgggtgaagctcctgacttcgagcgtttcaaatccctcggaaaggaaggggtc
attgcaatgattaccgaaagcacgaatgcagggcgctcaggaaagaccccctccgaacag
attgcaaaggacatggtcagggatgtactgctcgggacagaagagtccgatgtgggcatg
atcattacgacttttgcctctcacattgcaaggctcaaagcgattatcgaggctgccgag
gaaatgggcagaattccggtgcttatggggcgctccatggaacgttatgtgagtgcagcc
agagatgttggatatcttgacctgccctccaatgtggagatttacggcatgagaaaagat
gtagacagggcattcaagcgtatcatgcaggaaggcaagaacaagtatctacctattgtt
acaggacaccaaggagaaccaggctctattctcatgcgggttgcaaacggggaaacgcct
tacgcaattgaacctggagacaagatcattttctcagcaaatgtaatccctagcccaatg
actcaggcaaaccgctatgcacttgagaccaaactcaggatgaagggtggcaggatctat
gacaatgttcacgtatcagggcacgcgtacagggaagatcactgggaactcttgcgcatg
gtaaatcccgagcatgtaattcctgcccacggagatatggaaatgcacgggcactacatc
gagatggcagaggatgcagggtatgtactcggagataccgtacaccttctcagaaacggc
gaagtgttatatatagaagagtaa
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