Methanosarcina sp. WH1: MSWH1_3050
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Entry
MSWH1_3050 CDS
T03851
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mef
Methanosarcina sp. WH1
Pathway
mef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSWH1_3050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mef03019
]
MSWH1_3050
03400 DNA repair and recombination proteins [BR:
mef03400
]
MSWH1_3050
Enzymes [BR:
mef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSWH1_3050
Messenger RNA biogenesis [BR:
mef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSWH1_3050
DNA repair and recombination proteins [BR:
mef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MSWH1_3050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
Helicase_Sgs1
ResIII
Sigma70_r4_2
P3A
Motif
Other DBs
NCBI-ProteinID:
AKB23321
UniProt:
A0A0E3L5I3
LinkDB
All DBs
Position
complement(3727400..3730135)
Genome browser
AA seq
911 aa
AA seq
DB search
MSARMHSVLRQYFGYTAFRPLQEDIIRDVLDQKDVFVLMPTGGGKSICYQLPSLLLDGVT
VVVSPLISLMKDQVDGLEANGIAAACMNSTQGAREIRDVKTAFLENRLKILYIAPERLMM
PGTFAFLKKGKVSLFAIDEAHCISEWGHDFRPEYRKMKLLRDPKTGFPDVPVIALTATAT
DRVRKDIISQLGLAIDPEKGPYVASFNRSNLYYEVRPKKDTFSEITDYLLRHRGEAGIIY
CQSRNNVETLTKKLNLAGFRALPYHAGLSDSERARNQEMFIKDHVDIIVATIAFGMGIDK
SNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQKTNEKEKD
VSLVQLRQMVAYCEGNKCRRQTLMKYFGEEFPAACGNCDTCLRPKDTFDGTEAARKLIAC
IQELNQRFGTNYVIDVLTGSKNKKIKQNRHDKLKAHGSGKEFTKDQWRSLASEMLNTGLF
EVSGTQYPVLKLNSMSRKILKGSESVELVCPEGFMAGVKGSSVPEGSISPAPAGKITGKG
EDDIQFPTQLPAERYSTASEVLKKATSGKLSKSGTEHDPILFERLKALRKKIALKKNLPP
YIIFSDTSLKEMSTKLPQSPEEFHSITGVGDHKLRKYGDDFLKEIRDYCNDYGLISAEKA
EVSGDREIEPEKKRKAPKSPIRKSTFSELEIETEGLGIETPVPETGKEKALKISSLKVPE
TSPSKVPLKTPPEVHRLPTKRARCLDVSIQDWLEADSSSGSLNEIIPEGNSPEAVADVPK
TNCPDDFFENGSFEADSLEIGPSEIDLFEKDSLEKTYSLYLQGLDIGEIAEIESLSVKNV
YRQFERLILAGKIRKIDGLVPPERQQQIKTALEVLEVEFDSLLRARMGDNCPEEELKLIS
ALLLSKIPFSV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccagaatgcactctgtactccgccagtacttcggatatactgcttttcgcccc
ctgcaggaggacattatcagggatgttctggaccaaaaagacgtcttcgtgcttatgcct
acaggaggcggcaagtctatttgctaccagctgccttcccttctcctggacggggtaact
gtcgtggtctccccccttatttcccttatgaaagatcaggttgacgggcttgaggcaaat
gggattgctgcagcatgcatgaacagtacccagggtgccagagaaatccgggatgttaaa
acagcttttcttgaaaacaggttgaagatactctatattgcacctgagaggcttatgatg
ccagggacttttgcgttcctgaagaagggcaaggttagcctttttgcaatcgatgaggcg
cactgtatttcggaatggggccatgacttccggcctgagtaccggaaaatgaaactcctg
agggacccgaagacaggctttcctgatgtgccagttattgcactaacggctacagccacc
gacagggtcagaaaagacattatatctcagctcggacttgctattgacccggaaaaaggt
ccttatgttgccagctttaaccggagtaacctttactacgaggtcaggcccaagaaagat
actttttccgagattaccgattacctgctcaggcacaggggtgaagccggaatcatttac
tgccagagccggaacaacgtggaaacccttacaaaaaagctgaaccttgccgggttcagg
gctcttccctatcatgccggactttcagattccgaacgtgctcgaaaccaggagatgttc
ataaaagatcatgtggacataatagtggctacaatcgctttcggaatggggattgacaag
tcaaatgtccggtttgtaatacactacgaccttccccggaaccttgagagctattatcag
gaaaccggacgtggaggcagggacggcagtccatgtgaatgcatccttttttttagcagg
ggagaccgctttaaaattgagtacttcatcgcacagaaaacaaatgagaaagaaaaggat
gtctcccttgtgcagttaaggcagatggtagcctattgcgaaggaaataagtgcaggcgc
cagactctcatgaaatatttcggggaagagtttccagcggcatgcggtaactgtgatacc
tgcctaaggcctaaagacacttttgacgggaccgaggctgccagaaaactgattgcctgt
attcaggaattgaatcagcgcttcggtaccaattacgttattgatgtgctcacaggttcc
aagaataaaaagatcaagcaaaaccggcatgataaactgaaagctcatggcagcggcaag
gagttcacaaaggatcagtggaggtcgcttgcttccgaaatgttgaacaccgggcttttt
gaggtaagcgggacgcagtatcctgtcctgaaactgaactctatgagcaggaaaattttg
aagggatcggagagcgttgaacttgtctgtcctgagggttttatggccggggttaaaggg
agttctgttccagagggttctatttcgccagcacctgcaggcaaaatcacaggaaaaggc
gaagatgatatacaatttcctacacagcttcctgccgaaagatattcaactgcttctgag
gtccttaaaaaagcaacttccggaaaactttcaaaatcgggaacagagcatgatcccatt
ctttttgagaggctaaaagccctgagaaaaaagattgctttaaagaaaaatcttcctcca
tacatcattttttccgataccagcctgaaagagatgtctacaaagctcccgcaaagccct
gaagagtttcattctatcacaggggtaggagaccataaactccggaaatacggagacgat
ttccttaaggagataagggattactgtaacgactatgggttgatttctgcagagaaagct
gaggtttccggggatcgtgagattgaaccggaaaaaaagaggaaagctccaaagagtccc
atccgcaaaagtacattttcagaactcgaaattgaaaccgaaggtctcgggattgaaact
cctgttccggaaaccggtaaagagaaagctttgaaaatatcatctctcaaagtaccagaa
acatcaccttccaaggtgcctctcaaaacacctcccgaagtccacaggttgcctacaaag
agagcaaggtgtctggatgtgagtatccaggattggttagaagcagattcttcttctggc
agccttaatgaaatcatccctgaaggaaattctcctgaggctgttgccgatgtacccaag
acgaattgtcctgacgatttttttgaaaatggctcatttgaggcggactctcttgaaata
ggtccctctgaaattgatctctttgaaaaggattctcttgaaaagacgtattcgctctat
ttacaggggctcgatattggtgaaattgcagaaatcgaaagtttgagtgttaaaaatgtg
taccggcagtttgagaggctgatacttgccggaaagatcaggaaaattgacgggcttgtg
cctcctgaaaggcagcagcaaataaaaacggcactggaagtactggaggttgagtttgac
tccctgctcagggcgcggatgggggataattgtccggaggaggaactgaagcttataagc
gcgctccttctatctaaaatacctttctcagtttga
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