Methanochimaera problematica: F1737_05340
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Entry
F1737_05340 CDS
T09667
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
mefw
Methanochimaera problematica
Brite
KEGG Orthology (KO) [BR:
mefw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mefw03016
]
F1737_05340
Enzymes [BR:
mefw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
F1737_05340
Transfer RNA biogenesis [BR:
mefw03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
F1737_05340
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
S1
Motif
Other DBs
NCBI-ProteinID:
WOF16170
UniProt:
A0AA97I2E0
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All DBs
Position
1053749..1055233
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AA seq
494 aa
AA seq
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MPKYQDVDLKEIAWNTMIKYGFEPDFSKKVLKEIKGIKPDFSDIPPDVMDLRNLLWSSID
NFDSMDLDQIEYCRRNNDGSIHVKVAIADVDYYVPKNSYADQHAAYNGTSVYTGAVTFTM
LPDKLSKGITSLLPDQDRLAVVIEYDVQKSGKVHYGTIYRAIVSNKAKLIYEEIGDWLFG
NTPVPESVSKIPGLKEQLLLQNETAKILKKYRVKKGALLFETIEAEPVIENGKVKELAIQ
QQNPARSIIEELMVAANGTMAVFLGNAGLPIIERVVRIPKNWDGIVLTAANHGEKLPDTP
NSKKLSEFLIRSKEADPERFPDLSLTIIKLMGPGEYVALKPDKTPIGHFALAVSDYTHST
APNRRYADLIIQRLLKSALKNGKHAYKYYELEEKADWLTDRDALSKKVERFMQKAAAGVL
LQDRIGELFDAIVTGASDKGTYVRLKEIPVEGRVMKGEKGLMVGEKIRVKLLMTDPYKGY
IDFEFTGKIREPDR
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaatatcaggatgtggatctaaaggagatcgcatggaacacaatgataaaatat
ggctttgaacccgatttttcaaaaaaagttctgaaagaaataaaaggcattaaacctgat
ttttcagacattccccctgatgtcatggatttgcggaatcttctctggtcatccattgac
aacttcgactccatggatcttgaccagattgaatactgcaggagaaataatgacggaagc
attcatgtaaaagttgcaatcgcagatgtggattattacgttccaaaaaattcatacgcc
gatcagcatgccgcatacaatggtacatccgtttatacaggagctgtaacatttacaatg
cttcctgataagctttcaaaaggaataacatcacttcttccggatcaggacagacttgca
gttgtaattgaatatgatgttcaaaaatccggaaaagttcattatggtacaatatacaga
gccatcgtttcaaataaggccaaactgatctacgaagaaatcggagactggctttttggc
aacacacctgttccggaaagtgtttcaaaaattcccggattaaaagaacagctgctgctg
caaaatgaaactgcaaaaattcttaaaaaataccgtgtcaaaaaaggagcactccttttt
gaaactattgaagcagagccagttattgagaatggaaaagtaaaggagcttgcaatccaa
cagcaaaatcccgcacgttccattatagaagagttaatggtggcggcaaacggcacaatg
gcggttttccttggaaatgcaggacttccaataattgaaagggttgtaaggattcctaaa
aactgggacgggattgtcttaacagcagcaaatcacggagaaaaactccctgacacacct
aattcaaaaaaactttctgaattcttaattcgaagtaaagaggcagatcctgaacgtttt
cctgatctttcactgacaatcataaaactcatgggccccggtgaatatgtggcactaaaa
ccggataaaacgcctattggtcattttgcacttgcagtctctgattacacgcattcaacc
gcccccaacaggcgatatgcagaccttataatacaaaggcttcttaaatcagctcttaaa
aatggaaaacacgcatataaatattatgaacttgaggaaaaagcagactggctcactgac
agagatgctctgtccaagaaagttgaaaggtttatgcaaaaagcagcagcaggagtgctg
ttacaggacagaattggagagttatttgatgcaatcgtaactggtgcatctgataaggga
acttatgtccgtctaaaagaaattcctgtggagggaagagtcatgaaaggagaaaagggt
cttatggtaggggaaaaaatccgtgtgaaacttttaatgactgatccctataaaggatac
atagattttgaattcaccggaaaaataagagaacctgacaggtaa
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