Methanochimaera problematica: F1737_07710
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Entry
F1737_07710 CDS
T09667
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mefw
Methanochimaera problematica
Pathway
mefw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mefw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1737_07710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mefw03019
]
F1737_07710
03009 Ribosome biogenesis [BR:
mefw03009
]
F1737_07710
Enzymes [BR:
mefw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F1737_07710
Messenger RNA biogenesis [BR:
mefw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F1737_07710
Ribosome biogenesis [BR:
mefw03009
]
Prokaryotic type
rRNA helicases
F1737_07710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_22
PRD1_P5_spike_N
Motif
Other DBs
NCBI-ProteinID:
WOF16586
UniProt:
A0AA97I455
LinkDB
All DBs
Position
complement(1521353..1522960)
Genome browser
AA seq
535 aa
AA seq
DB search
MVSFLKFNELNISDEILRAIEDMGFEEPTPIQQLSIPLIMSGIDVTGQAQTGTGKTAAFA
IPVIEKIDSDNCHVQAIVLSPTRELTIQIAEEFNRLLKYRRDVRVIPIYGGQPIERQISA
LNKGVQVIIGTPGRVMDHLKRGTLKLSGVSTIVLDEADQMLDMGFKEDLEDILQYTPGDR
QTILFSATMPKPILKISKAFQKNPEFLKLNTKELTVPSIEQSYIELREKEKLEVLCRLID
INGPGLSMIFCNTKRRVDEISSSIRSRGYFAEGLHGDLKQSQRDNVMNKFRNGSIDILIA
TDVAARGIDVDDIDTVYNYDVPQDVEYYVHRIGRTGRAGKTGRAYTFVGPRETNKLRMIQ
KVANVKIRRTRPPSIKDVENCRIERFLDNVREVLAESDLSSYVSAVERLMDEDYTSVDIS
AALLKLHLESGSTRDKAVEEVKFNSAETGAEPGMVRFFINIGKAKGIRPGDIVGAIAGET
DIPGSSVGAISIYNDFSFVEVPEKYASEVFSIMNGGTIRGNEVSFEPAKRARSRS
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggtttcttttttgaaatttaatgagctcaacatttctgatgaaatacttagagcaatc
gaagatatgggctttgaagagccaacccctatacaacaactttcaatacccctgataatg
tcaggcattgatgtaaccgggcaggctcagacaggtacaggaaaaacagccgcctttgcg
ataccggttattgaaaaaatagattcagacaattgtcatgttcaggcaattgttctttca
cctacaagagaacttactatacagatcgcagaagagttcaacagacttttaaaataccgc
cgtgatgttcgtgtaattccaatttacggtggtcagcctattgaaaggcagatttcagct
ttgaataaaggtgtccaggtaatcatcggtactccgggaagagtaatggatcacctcaag
agaggaactttaaaactctcaggtgtcagcacaattgtactcgatgaagctgatcagatg
cttgatatgggctttaaggaagatttggaggatatcttacaatacactcctggagacaga
cagacaatcctcttctctgcaacaatgccaaagcctatcctgaagatatcaaaggctttc
cagaaaaatcctgaattccttaaactcaatacaaaagagcttacagttccttcaattgaa
cagtcatacattgagcttcgtgaaaaggaaaaactcgaagttctctgcagactcatcgat
ataaacggaccgggactctcaatgatcttttgcaataccaaaagaagagtggacgaaatt
tcctcctctatccgctcaagaggatattttgcagaaggtcttcacggtgacttaaagcag
agccagagggacaatgtgatgaacaaattccgcaatggctccattgatattttaattgca
accgatgttgcagcccgtggtattgatgttgatgacattgacaccgtatacaactacgat
gtcccgcaggatgtggagtattatgtccacagaataggaagaacaggaagagccggaaag
acaggccgtgcgtatacatttgtgggtccacgcgagaccaacaaactccgtatgatccag
aaggttgcaaatgtgaagatcagacgtacccgccctccaagcataaaggatgttgagaac
tgccgtattgaaaggttcctcgacaatgtaagggaagttctggcagaaagcgatctctcg
tcatatgtatccgctgttgaaagactcatggacgaagactatacatcagttgacatctct
gcggcacttttaaaacttcaccttgaaagcggatcaacaagagacaaagctgtggaagag
gtcaaattcaactccgctgaaacaggagcagagcccggaatggttcgcttctttatcaat
atcggaaaagcaaagggaatccgccccggagatattgttggtgcaattgcaggagagact
gatattcccggaagttcagtaggtgcaataagcatttacaatgacttttcatttgttgaa
gttcctgagaaatacgcttcagaagtgtttagtatcatgaacggcggcacaatccgcggt
aatgaagtttcatttgagccggcaaagagagcaagatcaagaagctga
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