Methanochimaera problematica: F1737_09425
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Entry
F1737_09425 CDS
T09667
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mefw
Methanochimaera problematica
Pathway
mefw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mefw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1737_09425 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mefw03019
]
F1737_09425 (recQ)
03400 DNA repair and recombination proteins [BR:
mefw03400
]
F1737_09425 (recQ)
Enzymes [BR:
mefw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F1737_09425 (recQ)
Messenger RNA biogenesis [BR:
mefw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F1737_09425 (recQ)
DNA repair and recombination proteins [BR:
mefw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
F1737_09425 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
HTH_40
RecQ_Zn_bind
ResIII
Helicase_Sgs1
HHH
Motif
Other DBs
NCBI-ProteinID:
WOF16890
UniProt:
A0AA97I319
LinkDB
All DBs
Position
complement(1851702..1853864)
Genome browser
AA seq
720 aa
AA seq
DB search
MTVTPENSDDKITTAKYYLRKYFGYSSFHPYQEEIIRNILTGRDVFAVIATGGGKSICYQ
LPAVMMKGTAVIISPLIALMKDQVDGLLANGIPAGCLNSTQDYSEYLMTVSRLKSGKLDI
LYVSPEKAVTPSFRALLKQFDVSLFAVDEAHCISQWGHEFRPEYRKLSILKKEFPKIPVI
ALTATATSVVRDDILKQLRLKLPYTYVGTFFRENLHYQVLPKKDAFGQILAYIKDHPRDS
GIIYCNSRNSAESLSKKLNLANVPALPYHAGLSKKIREKTQDKFIKDDIPVIVATVAFGM
GINKPDVRFVIHYDLSQSPEAYYQETGRAGRDGGRGDCILFYSRGDRAKIQYFIDKLDSR
TLRGVAEKKLEAMTEYCESNSCRFKTLLEYFGETNSDFRCGVCDNCINPRELFDGTEPAK
TAIKCIEMLKQPFGIGYIADILWGSSSARVKERGHDKLPLYGKGRMYKKDEWNSFLREMV
HLGYLSREGRKYPVIVLNETSADVVSGKITVYLTRPKGVKPGSKKAEAVYNTALYETLKR
LRKIVAESENIPPYQIFSDAVLAVMAEKMPLTPAEMLSIKGVGEYKVEKFGATFLRRIKD
FQKIPVNQEKNQGVLEKSPKSSVQTYDLYCRGYTVKQIAEERSLTEDIVCVHLEEMIKSG
AAIDLSDLVSSKKRDLVYSVLSDNFDIPVRDIRILLGEAVSYNEIRLIKAFWDKKNPGKN
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgactgttactcccgaaaattctgatgataaaataacgactgcaaaatattatctccgg
aagtatttcgggtactcttcttttcatccgtatcaggaggagattataagaaatatcctt
acaggcagggatgtttttgcagtcatcgcaacaggaggcgggaaatccatatgttatcag
cttccggcggttatgatgaaaggcactgctgttataatatcgcctcttattgccttaatg
aaagatcaggtggacggtcttttggcaaacggaatacctgccgggtgcctcaacagcacc
caggactattccgaatatctgatgactgtaagccggcttaaaagcgggaaacttgatatt
ctttatgtatctcctgaaaaagcggttaccccttctttcagagctcttttaaaacagttc
gatgtttccctgtttgcagttgacgaagcccactgcatatcccagtggggacatgaattc
cggccggaatacaggaagctgagcatacttaaaaaagagtttccaaaaataccggttatt
gctctcactgcaacggcaacgtcggttgtaagggatgatatcttaaagcagctcaggtta
aagctgccatatacatatgtggggacttttttcagggaaaatctccattaccaggttctt
ccaaaaaaagatgcctttggacagattcttgcctatataaaagatcacccgcgtgattcg
ggaataatatactgcaacagcagaaacagtgccgaatcactttcaaaaaagctgaacctt
gccaatgttccggctcttccctatcatgcagggctttccaaaaaaatccgtgaaaagact
caggataaattcataaaagatgacataccggtgattgttgcaaccgtcgcattcgggatg
ggaataaacaagcctgatgtaagattcgtaattcactatgatctctcacagagtcccgag
gcttattatcaggaaaccggacgtgccgggcgtgacggaggacgcggcgactgcattctc
ttctacagcaggggcgacagggcaaagatacagtatttcattgataaactcgacagcagg
acacttcggggtgttgcagagaagaaacttgaggcgatgactgaatactgtgaaagcaat
tcgtgccgttttaaaacccttctcgaatattttggtgagacaaacagtgatttcagatgc
ggtgtatgtgacaactgtataaatccacgtgagctttttgatggcacagaacctgcaaag
actgccattaaatgcattgaaatgctaaaacagccttttggaataggttatattgctgat
attttgtggggttcatcgtctgcccgggttaaggaaagagggcatgacaaacttcctctg
tacggtaagggcagaatgtacaaaaaggatgagtggaattcttttctaagagagatggtc
catcttggatatctttcaagggaaggaagaaaataccctgtaatcgtattaaatgagacc
agtgccgatgtggtttcaggcaaaattactgtatatctgacaaggcccaaaggagtaaaa
ccgggatcgaaaaaagcagaggcggtttataatacagcgctttatgaaactctcaaaaga
ctccgcaagattgttgccgagagtgaaaatattcctccctatcagatattttcagacgcc
gttcttgccgtgatggcggaaaaaatgccccttactcctgctgagatgctctcgataaaa
ggtgtcggcgagtacaaggttgaaaagttcggagcaacttttctaagacgaattaaggat
tttcaaaaaatccccgtgaatcaggaaaagaaccagggagtattggaaaaatccccaaaa
agctctgttcagacatatgatctctattgcaggggatacacggtgaaacagattgcagaa
gagaggagtcttacggaagatattgtgtgcgttcatcttgaagagatgataaaatccggt
gcggcaattgatctatccgatcttgtatcttccaaaaaacgtgatcttgtatattcagta
ctttctgataactttgacataccagtaagggatatcagaattcttctgggagaagctgtt
tcctacaatgagattaggcttataaaggcattttgggataagaaaaacccgggcaaaaac
tga
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