Megasphaera stantonii: DKB62_10300
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Entry
DKB62_10300 CDS
T05599
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
meg
Megasphaera stantonii
Pathway
meg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DKB62_10300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meg03019
]
DKB62_10300
03009 Ribosome biogenesis [BR:
meg03009
]
DKB62_10300
Enzymes [BR:
meg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DKB62_10300
Messenger RNA biogenesis [BR:
meg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DKB62_10300
Ribosome biogenesis [BR:
meg03009
]
Prokaryotic type
rRNA helicases
DKB62_10300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AXL21923
UniProt:
A0A346B1D0
LinkDB
All DBs
Position
complement(2169433..2170692)
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AA seq
419 aa
AA seq
DB search
MSKTFQSLGITPELCELLRKQGIREATAIQEQAIPPVFKGRDILAQAQTGTGKTYAFLLP
SLQQVKPNVHMEQVLIIAPTRELARQIAEVADALAPALGVDVLSLIGGKTIENQLQKLHR
HPHVIIGTPGRLLDHCRRNSLDLSGVGRVVVDEADQMLQSGFLEDVDILISMTPKRRQLL
FFSATIPDKIRGLAKKHMQNPLSLRVLEGETIALEQIEQRIYMTSEDKKFGMLCQMLQEM
NPYLAVVFCNTKERTAQLAGQLIAAGFNIGELHGDMSQGRRTQVLRDFARAKTQILVATD
IAARGIDIEGITHVFNYDVPRDVDYYIHRIGRTGRAGNEGLSVMFATGSDEDWVRRIEHS
IHATITKYTTSGKIKVKASAQPPKKKKVYKDKLPASTYQPTKSKRHKTLHKGGDNRRRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaacattccaatccttaggcattacgccggagctttgcgaactgctgcgcaag
cagggcatccgtgaggccacggccatacaggaacaggcgatcccgcctgtatttaaaggg
cgcgacatactggcccaggcccagaccggcacgggcaaaacctacgccttcctcctgccg
tcattgcagcaggtcaagccgaacgtccatatggagcaggtccttatcatcgcgccgacg
cgcgagctggcccggcagattgccgaagtagccgacgccctagccccggctctcggcgtc
gacgtcctcagcctcatcggcggcaagacgatcgaaaaccagctgcagaagctgcaccgc
catccccatgtcatcatcggcacgccgggccgcctcctggaccattgccgccgcaattcc
ctcgatttaagcggcgtcggccgggtcgtcgtcgacgaagcggaccaaatgctgcagtcg
ggatttttagaagacgtcgacatcctcatcagcatgacgcccaagcgccgtcagctcctg
tttttctccgccaccataccggacaaaatcaggggtctggctaaaaaacacatgcagaat
cccctgtcgctccgcgtattagaaggcgaaaccatcgctctggagcaaattgaacagcgc
atctacatgaccagcgaggacaaaaaattcggcatgctgtgccagatgctgcaggaaatg
aatccctacctggccgtcgtattctgcaatactaaagagcggacagcccagctggccggt
cagctcatcgccgccggcttcaatatcggcgaactccacggcgacatgtcccaaggccgc
cgcacccaggtgctgcgcgatttcgcccgggctaagacgcagattctcgtcgcgacggat
atcgccgcccgcggcatcgacatcgaaggcattacgcacgtattcaactacgacgtcccc
cgcgacgtagattattatatccaccgcatcggccggacaggccgggccggcaacgaaggc
ttgtccgtcatgttcgccaccggctctgacgaagactgggttcgccgcatcgaacacagc
attcacgccacgattaccaaatatacgacgagcggcaaaatcaaagtcaaggccagcgcg
cagcctcccaaaaagaaaaaggtatacaaggacaagctgccggccagcacgtaccagcct
acgaaaagcaagcgccacaaaacgctgcataagggcggagacaaccgccgccggcggtaa
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