Megasphaera stantonii: DKB62_11850
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Entry
DKB62_11850 CDS
T05599
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
meg
Megasphaera stantonii
Pathway
meg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DKB62_11850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meg03019
]
DKB62_11850
03009 Ribosome biogenesis [BR:
meg03009
]
DKB62_11850
Enzymes [BR:
meg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DKB62_11850
Messenger RNA biogenesis [BR:
meg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DKB62_11850
Ribosome biogenesis [BR:
meg03009
]
Prokaryotic type
rRNA helicases
DKB62_11850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AXL22197
UniProt:
A0A346B254
LinkDB
All DBs
Position
complement(2516930..2518519)
Genome browser
AA seq
529 aa
AA seq
DB search
MLEKFQTLQISDVILNALNEMGFEEPTPIQANAIPVAMSGCDMIGQAQTGTGKTAAYGIP
VLEKILASEPSKEIQAVVLSPTRELAMQVAEELNHLAQFTHIQALPIYGGQDMERQLRRL
RKSPQIVVATPGRLIDHMKRGTISLSHISTIVLDEADEMLDMGFIEDINLIMAATPSTRQ
TLLFSATMPKPIQQLAETFLHDPQIVRMKAKEVTIDLIEQSYIEVPDRQKFDILCRLLDL
QEPDLAIIFVRTKRRVDELSEALKKRGYSAEGIHGDLTQAKRDTVIRQFREKTIDILVAT
DVAARGLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGQSGEATTFVIPREIDHLRAIER
LIKRRIARRKAPTFSEALEGAQQAAIRRLVAATEDDNYSIYRANAEELLTHFDSVALLSA
AIKLLTKEPDTTPVNITEEAPLRVHRSRRPYGDKNRRRDYRHDRSDRNDRSERNDRSERS
GDYRSGNTKRRHFAPRKQNDNASGTFRRSGEKKVRKEPNRSVFKPYFKD
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgttagaaaaatttcaaaccttacaaattagcgacgtcattctcaacgccttaaacgaa
atgggctttgaagaaccgacgccgattcaggcaaacgccatccccgtcgccatgtcgggc
tgcgatatgatcggccaggcacagaccggcacgggcaaaacggcagcctacggcattccc
gtattagaaaaaatattagcgtccgagccgtcgaaggaaatacaggccgtcgtcctgtcg
ccgacgcgcgagctggccatgcaggtcgccgaagagctcaaccacctggcccagttcacc
cacatccaggccctgccgatttacggcggtcaggatatggaacggcagctgcgccgcctg
cgcaaatcgccgcagatcgtcgtcgccacgccgggccgcctcatcgaccacatgaagcgc
ggcaccatcagcctgagccatatttcgacgatcgtccttgacgaagccgacgaaatgctg
gacatgggcttcatcgaagacatcaacctcatcatggccgccacgcccagcacccgtcag
accctgctgttctcggctaccatgcccaagcccattcagcagctggcggaaaccttcctc
cacgacccgcagatcgtccgcatgaaggccaaggaagtaactatcgacctcatcgagcag
tcctacatcgaagtgccggaccgccagaagttcgacatcctctgccgccttctcgacctg
caggagccggatttggccatcatcttcgtccgcaccaagcgccgcgtcgacgagctgtcc
gaagccctgaaaaagcgcggctattccgccgaaggcattcacggcgacctgacccaagct
aaacgggacacggtcatccgccagttccgggaaaagaccatcgatatcctcgtcgccacc
gacgtcgccgcccgcggcctcgacatcagcggcgtcacccacgtattcaactacgatttg
ccccaggacccggaaagctatgtccaccgtgtcggccgtacaggccgggccggccagagc
ggcgaagcgacgaccttcgtcattccccgcgaaatcgaccacctgcgggccatcgaacgg
ctcatcaaacggcgcatcgcccgccgcaaggccccgaccttctcggaagccctggaagga
gcccagcaggcggctatccgccgtctcgtcgccgcgacagaagacgacaactacagcatc
taccgggccaacgccgaagagcttctcacccacttcgactccgtcgccctcttgtcggca
gccatcaagctgctcacgaaggagccggacacgacgccggtcaacattacggaagaagcg
cccctgcgcgtccaccgctcccgccgtccctacggcgacaaaaaccgccgccgcgactat
cgtcacgaccgcagcgaccggaacgaccgttccgaacgaaacgaccgaagcgaacgcagc
ggagactatcgaagcggcaatacgaaacgccgtcacttcgcgccgcggaagcaaaacgac
aacgcgtcgggaacgttccgccgcagcggcgaaaagaaggtccgtaaggagccgaaccgc
tccgtgttcaagccctattttaaagactaa
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