Methylotenera versatilis: M301_1117
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Entry
M301_1117 CDS
T01247
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
meh
Methylotenera versatilis
Pathway
meh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M301_1117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meh03019
]
M301_1117
Enzymes [BR:
meh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M301_1117
Messenger RNA biogenesis [BR:
meh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M301_1117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
LKAAEAR
Utp25_C
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ADI29501
UniProt:
D7DQD0
LinkDB
All DBs
Position
complement(1248026..1249426)
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AA seq
466 aa
AA seq
DB search
MTETVVLENLAFTDLGLAPELLKALTESGYTKPTPIQAQAIPVALAGGDLMAGAQTGTGK
TAAFALPLLQKLLPLASSSASPAKHPVRALILTPTRELAIQVEESVKAYAKHTPLRSLVV
YGGVDIKTQTPHLKTGVEVLVATPGRLLDHIEQKTIQLNQVQILVLDEADRMLDMGFMPD
LKRILALLPKQRQNLMFSATFSNDIKKLADEFLTKPQLIEVARSNATNDNVTQKVYEVAQ
SDKETLLIQLLKAANASQVIIFTKTKITASRLSRSLAREGIAADAIHGDKTQQERIKALD
GFKAGTITALVATDVAARGLDISELPMVINYEIPSAPEDYVHRIGRTGRAGALGIAISFV
SPEEDKYIVEIEKLIKRQIPKETVALEKPSSKARSTSNKESSYKPNNTQDASATKRMPPK
KKSSDPWFDKPYEASTAPSNANVIAKPILGNKAPVAALLGGLRLNK
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaacagtagttttagaaaatctcgcttttacagatctaggtttagcgccagag
ttacttaaagcgctaactgagtctggttacaccaaacctacgccaattcaggcacaggca
atccctgttgctttggcggggggcgacttaatggcgggcgcgcaaactggtacaggtaaa
actgcagcgtttgcactacctctgttacaaaaattactgccactggcaagctcaagtgct
tcacctgctaaacaccctgtccgcgcgttgattttaacgccaacgcgtgaattggcgatt
caggtagaggaaagcgtaaaagcgtatgcaaaacatactccacttcgctcgcttgtagtt
tatggtggtgttgacatcaaaacccaaacgccacaccttaaaacgggcgtagaagttttg
gtcgcgacgccaggtcgtttgttggatcatattgaacagaaaactattcagctaaaccaa
gtgcaaatattggtacttgatgaagccgatagaatgttagacatgggctttatgcctgat
ttaaaaagaattttggcgttgctacctaagcagcgtcaaaatttaatgttttctgcaaca
ttttcaaacgacattaaaaaattagccgatgagtttttaactaaacctcagttgattgaa
gtcgcgcgcagcaatgcgaccaatgataacgtgacacagaaagtctacgaagtcgcacaa
agcgataaagaaacgcttttaatacaattattaaaagctgctaatgcaagtcaggtgatt
atattcaccaaaaccaaaattactgccagccgcctaagccgtagcttagcgcgtgaaggc
attgccgctgatgcgattcatggcgacaaaacacaacaagaacgtattaaagccttagat
gggtttaaggcagggacaattactgcactagttgcgactgatgttgctgctcgcggttta
gatattagcgaattaccaatggtaattaactatgaaattccaagtgcaccagaagattac
gtacaccgtattggccgtacaggtcgcgctggtgcgttaggtatcgcgatttcttttgtt
agcccagaagaagacaaatacatcgttgaaatcgaaaagctgattaaacgccaaattcca
aaagaaactgtcgcgcttgaaaaaccaagtagtaaagcacgctcaactagcaataaagaa
tcaagctacaagccaaataatacccaagatgcgagcgctaccaagcgtatgccacctaaa
aagaaaagtagcgacccgtggtttgataagccttacgaggcttcgactgcaccatctaat
gcaaatgttatcgccaaaccgattcttggtaataaagcacctgttgcagcactgctaggc
ggattaagattaaataagtag
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