Methylotenera versatilis: M301_1959
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Entry
M301_1959 CDS
T01247
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
meh
Methylotenera versatilis
Pathway
meh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M301_1959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meh03019
]
M301_1959
Enzymes [BR:
meh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M301_1959
Messenger RNA biogenesis [BR:
meh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M301_1959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
Shikimate_DH
P-loop_SecA
HI1480
AAA_22
DUF8086
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADI30331
UniProt:
D7DJX0
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All DBs
Position
2181085..2182683
Genome browser
AA seq
532 aa
AA seq
DB search
MTTETILNFNELGLSEPILRAINDAGYTTPTPIQSKAIPQVLSGGDLLAGAQTGTGKTAG
FTLPILHLLSQKPLSEVVKGRPRCLMLTPTRELAAQIEESVKVYGKFLPLTSTVIFGGVN
ANPQIARLKKPLDILVATPGRLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDIKKIL
AMLPKQRQNLLFSATFSDEIKALADGLLHNPGFVEVARRNTASELVEQTVHMVAQGHKRE
LMSHLIQQNDWQQVLIFTRTKHGANRLAEKLVKDGIQSAAIHGNKSQSARTKALAQFKDG
TMRVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSLVDREEL
KLLKDIEKLIKREIPKVQVEGFTPSDKPEPEAPRSTQPHGRPPRGHGQGQQRKAHVPAST
EGNGANPNAGRNQNRGNGQRNGQAPRNDARANTEGRPAQGNKARPAQGENTRNMSEAARH
QAMPQPALFVPPSPNRHQPNRQNAARPNEGRGNAGRTNANPNSAHRSGGRGR
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
ttgacaactgaaacaatccttaactttaacgagttaggtttatctgaacccattttgcgt
gcgattaacgacgcaggatataccaccccaaccccaattcaatctaaagcgataccgcaa
gtattaagcggtggcgatttacttgctggcgcgcaaaccggaacgggtaaaaccgcaggc
tttaccttgccgattttgcatctgcttagccaaaaacctttgagcgaagttgttaaagga
cgcccgcgctgcttaatgctaacgccaacgcgcgagcttgctgcgcagattgaagaatct
gtaaaagtgtatggcaagtttttacctttaacctctactgtaatttttggcggagtaaac
gccaacccacaaattgcgcgcttgaaaaaaccactggatattttagtggcaacgccaggc
cgcttgcttgaccatgctaaccaaaaaaacgttgatttgtcaggcattgagattttagtg
ctagatgaagctgatcgcatgttggacatgggttttatccgtgacatcaaaaagatatta
gcaatgctacctaagcaacgccagaacctattgttctctgcgactttctcagacgaaatc
aaagccttagccgatggtttattgcacaacccaggctttgtggaagtggctcgtcgcaac
actgcctctgaactggtagagcaaacggtacacatggttgcgcaaggccataaacgtgag
ttaatgagccacctcattcaacaaaacgattggcagcaagtattaatattcactcgcacc
aaacacggtgcgaatcgtttagctgaaaaactggtaaaagacggtattcaatccgcggcc
attcacggcaacaagagccaaagtgcacgtacaaaagcattagcgcaatttaaagacggc
acgatgcgtgtgttagttgccactgacatcgcggcacgtggtttggacattgaccaatta
ccgcaagttgtgaattttgaattaccgaatgtaccagaagattatgtacatcgtattggc
cgtaccggtcgtgcaggcagtagcggtgccgcggtttcattggttgatcgtgaagaactg
aagctgcttaaagacattgaaaagctaattaaacgcgagattccaaaagtgcaagttgaa
ggctttacaccatctgataagccagaaccagaagcaccacgttcaacccaacctcatggc
agaccaccacgtgggcacggtcaaggtcaacaacgtaaggcgcatgtgccagctagcact
gaaggcaatggcgcaaaccctaatgctggtcgtaatcaaaaccgaggcaatggtcagcgt
aacggccaagcgccgagaaacgatgcaagagcgaatacagagggtcgcccagcacaaggc
aacaaagctagacctgcgcaaggtgaaaacacaaggaatatgtcagaagctgcgcgccac
caagcaatgccgcaaccagctttatttgttccaccaagcccgaatcgccatcaacctaat
cgacaaaatgctgcacgccctaatgaaggtcgcggtaatgcgggcagaacgaacgcaaac
ccaaatagtgcacacagaagcggtggtagaggtcgttaa
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