Methanimicrococcus hongohii: MmiHf6_05340
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Entry
MmiHf6_05340 CDS
T09450
Symbol
rph_2
Name
(GenBank) Ribonuclease PH
KO
K11600
exosome complex component RRP41
Organism
mehf
Methanimicrococcus hongohii
Pathway
mehf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mehf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MmiHf6_05340 (rph_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mehf03019
]
MmiHf6_05340 (rph_2)
Messenger RNA biogenesis [BR:
mehf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MmiHf6_05340 (rph_2)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MmiHf6_05340 (rph_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
WNY23229
UniProt:
A0AA96UYX8
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All DBs
Position
complement(670333..671664)
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AA seq
443 aa
AA seq
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MSSNQTDVVFFDENGLRTDQRKPDEIRPMKIKIGVLSRANGSCYLEWGGNKVIAAVYGPR
EAHPRRMQLAGKAVIRYRYNMQSFSVEDRARPGPSRRSSEISKVSREAFEPVLFAEDYPK
AAIDIFVEVLQADAGTRTAAINAASLALVDAGIPMRGLVSACAAGKVGGKIVLDLNKPED
NYGEADLPIAMTEDGKITLIQMDGHLTPSEFEEAMALVQQGCRQVLEIQKAALLEKFASV
MDDEEDEVVVEEEVEEDVVEEEVEEDVVEEDVEDDAENDENGEFANDAEDVDESDFNEIN
EDEIDAFVAEVSQRLAKDVSAIIRSYESGTLDLDEDDADLDIIVIDEDEINPEDLKEIEK
FVADFDDEEDDNAEDDDENENEDEDDGEDDDDDGETDIFVIDADDLDDDSEDEDEVVDAE
SDEESDEDEGEIEYDDEDEGEED
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaaaccaaaccgacgtggttttttttgatgaaaacggtcttcgaacagaccag
agaaagcccgacgaaatccgcccgatgaaaattaaaatcggtgtcctgtcgcgcgcaaac
ggctcctgctatttagaatggggcggaaacaaagtgattgcagccgtttacggtccccgc
gaagcgcacccgcgccgcatgcagttagccggaaaagcagtcatccgatacagatacaat
atgcagtctttctccgtggaagaccgcgccagacccggacccagccgccgcagcagtgaa
atttcaaaagtcagccgcgaagcctttgagccggttcttttcgcagaagattatcccaaa
gccgcaattgatattttcgttgaagttcttcaggccgatgccggaacaagaacggctgca
atcaacgccgcttcacttgcgcttgtcgatgcaggcattccgatgcgcggattggtttcc
gcctgcgctgccggtaaagtcggcggtaaaatcgttttggacttaaacaagcccgaagac
aattacggcgaagctgatttgccgattgcgatgacggaagacggcaaaattacattgatt
caaatggacggtcatttaacgccgtccgaattcgaagaagcgatggcgcttgttcagcaa
ggctgccgtcaggttcttgaaattcagaaagcagcgcttttggaaaagttcgcgtccgtt
atggatgacgaggaagacgaagtcgttgttgaggaagaagtcgaagaagacgttgttgaa
gaagaagtcgaagaagacgttgttgaagaagatgttgaggacgacgccgaaaatgatgaa
aacggcgaattcgcaaatgatgccgaagatgttgatgaaagcgattttaatgaaatcaat
gaagatgagattgacgctttcgttgcggaagtttcacagcgcctcgcaaaagacgtatcc
gcaatcatccgcagctacgaatccggcactctcgatcttgatgaagatgacgccgatttg
gatatcattgtcattgatgaagatgaaatcaatcccgaagatttaaaagaaatcgaaaaa
ttcgtcgccgattttgatgacgaagaagatgataacgcagaagacgatgacgagaatgaa
aatgaggatgaagatgacggcgaggacgatgacgacgacggcgaaacagacatctttgtc
attgatgccgacgatcttgacgatgattcggaagatgaagacgaagtcgttgatgccgaa
tccgatgaagaaagtgacgaggacgaaggagagattgaatacgatgatgaagatgaaggc
gaggaggactga
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