Methanimicrococcus hongohii: MmiHf6_06640
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Entry
MmiHf6_06640 CDS
T09450
Symbol
rnj1
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mehf
Methanimicrococcus hongohii
Pathway
mehf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mehf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MmiHf6_06640 (rnj1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mehf03019
]
MmiHf6_06640 (rnj1)
Messenger RNA biogenesis [BR:
mehf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MmiHf6_06640 (rnj1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Enolase_C
Nkap_C
Motif
Other DBs
NCBI-ProteinID:
WNY23357
UniProt:
A0AA96VAD2
LinkDB
All DBs
Position
complement(825812..827155)
Genome browser
AA seq
447 aa
AA seq
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MEDIGIVAVGGYNEMGRNMTAVVVGEDIVILDMGIRLDRVQIHEDAEIDRMHSLELIDMG
AIPDDTIMRDVNGTVRAIVCTHGHLDHIGAIPKLAHRYNAPIISTPYTTALIRQQIDEEK
KFKVNNPLIALKAGGTYEITEDISVEFVSIPHSIVDSVIAVLHTPYGSVMYACDFKLDRA
PTIGDSPDFDTLRRIGQDGVLAMITETTNSARSGKTPSETIAKEMLRDVLLGTEESHVGM
IVTTFASHIARLNAIIEIAEEMGRIPVFMGRSMEKYLYAAHELGYITLPEDVEVYGHRKD
VDRALKKIMEGGKEKYLPVVTGHQGEPGSILIRIANGETPFKVESGDRIIFSANIIPSPM
TRANRYALETKLKMRGARIYDDVHVSGHAYREDHWEMLRIVQPTHVIPAHGDLAMHSAYI
EMAEDAGYVLGETVHLLRNGEILFLEP
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggaagatattggaattgtcgccgttggcggttataatgaaatgggccgtaacatgacg
gctgttgtcgtcggcgaagatattgttattttggatatgggcatccgcttggaccgtgtt
cagatccacgaggatgcggaaatcgatcgcatgcactcgcttgaattgattgacatgggg
gccattcccgatgatacgattatgagagacgtgaacggaacggttcgcgcaatcgtttgt
acgcacggccacttggaccatatcggtgcgattccgaagctggcgcaccgctacaacgcg
ccgatcatttcaacgccgtacacgaccgcgctcatccgccagcagatcgatgaagagaag
aaattcaaggtcaacaatccgctgattgcgctcaaagccggcggcacatatgaaattacg
gaagacatcagcgttgaatttgtcagcattccgcacagcattgttgacagcgtgatcgcg
gttctgcatacgccttacggctccgttatgtacgcctgcgacttcaaattggaccgcgcg
ccgacaatcggcgactcgcccgactttgacacgcttcgcagaatcggacaggacggcgtt
ttggcaatgatcaccgagacgacaaacagcgccaggtccggtaaaacaccatctgaaacg
attgcaaaagaaatgctccgcgatgttcttttgggaacggaagaatctcacgtcggtatg
atcgtgacgactttcgcctctcacatcgctcgtttgaatgcgattattgaaatcgccgaa
gaaatgggacgcattcctgtgtttatgggacgctctatggaaaaatatctttacgccgct
cacgaactcgggtacattacgcttcccgaagacgttgaagtttacggtcacagaaaggat
gtcgaccgcgctttgaaaaagatcatggaaggcggcaaggagaaatatttgcctgtcgtc
accggtcaccagggcgagcccggatctattttgatcagaatcgcaaatggtgaaacgccg
tttaaagtagaatccggcgatcgcattattttctcggcaaatattatcccaagtccgatg
acgcgcgccaaccgctacgcgcttgaaacaaaattgaagatgcgcggcgcaagaatttat
gacgacgttcacgtttccggccacgcttaccgcgaagaccactgggaaatgctcagaatc
gttcagccgacgcacgtcattcccgcacacggcgacttggcaatgcacagcgcttacatt
gaaatggctgaagatgccggctatgttctcggagaaacggttcacctgctcagaaacggt
gagattcttttccttgaaccctga
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