Methanimicrococcus hongohii: MmiHf6_07230
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Entry
MmiHf6_07230 CDS
T09450
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mehf
Methanimicrococcus hongohii
Pathway
mehf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mehf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MmiHf6_07230 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mehf03019
]
MmiHf6_07230 (cshA)
03009 Ribosome biogenesis [BR:
mehf03009
]
MmiHf6_07230 (cshA)
Enzymes [BR:
mehf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MmiHf6_07230 (cshA)
Messenger RNA biogenesis [BR:
mehf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MmiHf6_07230 (cshA)
Ribosome biogenesis [BR:
mehf03009
]
Prokaryotic type
rRNA helicases
MmiHf6_07230 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecX_HTH1
Cas3-like_C_2
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
WNY23416
UniProt:
A0AA96V8I2
LinkDB
All DBs
Position
887608..889254
Genome browser
AA seq
548 aa
AA seq
DB search
MTTTFQDLGISDRIIQTLLMKGYENPTPIQIQTIPLFLSGDCNIIGQAQTGSGKTAAFGI
PIIQNITEKTGRVQAIVLTPTRELAIQVCDEMSSFGGMKGLNIVPVFGGQPIPIQLRALA
AGADIVVGTPGRVIDLIHRKRLDLSHISYFVLDEADEMLNMGFIDDIKEIIQHTSDDKRM
LCFSATMPKPILGIAKKYMGQYEMVSVEKVQESVLIEQLSIDVPPALKFEALCRVIDSDP
DFYGLVFCARKDTSDEVVQRLEERGYDADVIHGDILQEQRIRIMDRFRKHKLKILVATDV
AARGIDVNELTHVVNYDIPQDPESYTHRIGRTGRAGKTGIAITLLTPSDFRKFAFIKKLA
NVDVRRVELPDADQVAAMKRDKLLHDLSVAVQSDFVNTEEAEPFKEFAEALITEDRTAED
VVACLLKRAYESRILPRADDKLIDEMFAQIPKNRFVNDGAKKGRYGAKNSDDGRSRDRNG
GYSKGGRSGGSGYKKEGGRSDDRKGGSKYKSGSSSSGSGNKGGKKYGGKDSSSNKDYAMK
RIENKKYK
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaacatttcaagatctcggcatatcggacagaattattcaaactcttctcatg
aaaggatatgagaatccgaccccgattcaaattcaaacaattccgcttttcttaagcggt
gactgcaatattattggtcaggcgcagacaggctccggaaaaaccgcagcattcggcatc
ccgatcattcaaaatatcaccgaaaaaacaggccgcgttcaggcaatcgttttaacgccg
acacgtgagcttgcgattcaggtttgtgatgaaatgtcgtctttcggcggcatgaaagga
ttaaacatcgtccccgttttcggcggtcagccgattccgattcagcttcgcgcgcttgca
gccggcgcagacatcgttgtcggaacacccggccgtgtcattgatttgattcacagaaaa
cgcctcgatttgtctcacatttcttatttcgttttggacgaagccgacgaaatgctgaac
atgggattcattgacgatatcaaagaaatcattcagcacacaagcgacgacaaacgtatg
ctctgtttctcggcaacgatgcccaaaccgattttgggaattgctaaaaaatatatgggt
caatacgaaatggtttccgtcgaaaaagttcaggaatccgttttgatcgaacagctttca
attgacgttccgccggcattgaaatttgaagcgctttgccgtgtgatcgactccgatccc
gacttttacggattagttttctgcgcccgaaaagacacttccgacgaagtcgttcagaga
ttggaagaacgcggctacgacgccgacgtgattcacggcgacattttacaggagcagcgc
atccgtattatggaccgcttcagaaaacataaattgaaaattttggtcgcaaccgacgtt
gccgctcgcggtattgacgtgaatgaattaacgcacgttgtcaactatgatatcccgcaa
gaccccgaatcttatacgcacagaatcggaagaaccggccgcgccggaaaaaccggtatc
gcaattacacttttaacgccctctgatttcagaaaattcgcgtttatcaaaaagcttgcc
aacgttgatgtccgccgcgtcgagcttccggatgccgatcaggtggccgcgatgaagcgc
gacaaattacttcacgacctttcggttgcggttcaatccgatttcgtcaacaccgaagaa
gccgaaccgttcaaagagttcgcggaagcattgattacggaagacagaactgcagaagat
gtcgttgcctgccttttgaaacgcgcttatgaaagcagaattttgccgcgcgccgatgac
aaacttattgatgaaatgtttgcgcagattccgaaaaaccgtttcgtcaatgacggtgcc
aagaaaggaagatacggcgccaaaaacagtgacgacggcagaagccgtgaccgtaacggc
ggctactccaaaggcggcagaagcggcggctccggctacaaaaaggaaggcggcagatct
gacgaccgcaaaggcggcagcaaatacaagagcggatccagcagcagcggaagcggaaac
aaaggcggcaagaaatacggcggcaaagattccagttccaacaaggattacgcaatgaag
agaatcgaaaacaagaaatataaatga
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