Methanimicrococcus hongohii: MmiHf6_13000
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Entry
MmiHf6_13000 CDS
T09450
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mehf
Methanimicrococcus hongohii
Brite
KEGG Orthology (KO) [BR:
mehf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mehf03016
]
MmiHf6_13000 (rtcB)
Enzymes [BR:
mehf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MmiHf6_13000 (rtcB)
Transfer RNA biogenesis [BR:
mehf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MmiHf6_13000 (rtcB)
Prokaryotic type
tRNA splicing ligases
MmiHf6_13000 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WNY23976
UniProt:
A0AA96ZU70
LinkDB
All DBs
Position
complement(1650933..1652411)
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AA seq
492 aa
AA seq
DB search
MSNQNKEKNESDVTDELTRVNDNIWDIPKTHAYGMNVPGRLFLSEKLMGTIDKETINQVA
NVAMLPGILDYSMAMPDVHLGYGFTIGGVAAFDDEEGVISPGGVGFDINCGVRLMKTNLQ
KEDAIPHIKTLTENLFHKIPSGVGSKGEFKVTDTELTEAFLHGSQWAVEAGYGIESDAKN
CESLGFMEGAAPEKVGTKARKRGRPQFGTLGSGNHFLEIQYIDKIYDPAAAAAYGLSEGQ
VTVMIHCGSRGAGHQICTDHLQTLNQAVKKYKINVPDMQLACAPVKSKEAQDYFDAMKCG
ANYAWANRQIIMHWTREVFEQFYKKDTDALGMELLYDVAHNIAKYETHVVDGKKQDVYVH
RKGATRAFPAGHPEVLQQYRDVGQPVLIPGSMGTPSFILKGGPNSMSLSFGSACHGAGRV
MGRGKAKDSMSGEAVQEELAKQGITVRAERASVIAEEAPSVYKNSDDVVDVVDSLGIAQK
VARLIPIGVIKG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatcaaaataaagaaaaaaacgaatcggatgtcaccgacgaactcactcgcgtc
aacgacaacatttgggacattccaaaaacgcatgcatacgggatgaatgtccccggcagg
ctttttttatcggaaaaattaatgggaacgattgacaaagaaacgattaaccaggtggca
aacgtcgcgatgctgccgggaattttagattattcgatggcaatgcccgacgtccatctc
ggctacggttttacgatcggcggcgttgcggctttcgatgatgaagaaggcgtcatcagc
ccgggcggcgtcggctttgacatcaattgcggcgttcgcttaatgaaaacaaatcttcaa
aaagaagacgcgattccgcacatcaaaacactgaccgagaatttatttcataaaattccg
tcaggcgtcggctcaaaaggtgaatttaaagtgaccgacaccgaattgacggaagcgttt
ctgcacggctcacagtgggcggttgaagccggatacggaatcgaaagcgatgcaaaaaat
tgcgagtcgctcggttttatggaaggcgcagcacccgaaaaagtcggaaccaaagccaga
aaaagaggaagaccgcaattcgggacgcttggcagcggaaatcactttttggaaattcaa
tacattgacaagatttacgatcctgccgctgctgccgcttacggcttgtccgaggggcag
gtgacagtgatgatccactgcggctcccgcggcgccggtcaccagatttgtacagatcat
ttgcagacgctgaaccaagctgtaaaaaaatacaaaatcaatgtgcccgatatgcagctt
gcctgcgcgccggtcaaatccaaagaggcgcaggattattttgacgcgatgaaatgcggc
gcgaattacgcgtgggcgaatcgtcaaatcattatgcactggacgcgcgaagtttttgaa
caattctacaaaaaggacaccgacgcgctcggtatggaattgctttacgatgtcgcgcac
aatatcgcgaaatatgaaacgcatgtggtcgacggtaaaaaacaggatgtttacgttcac
agaaaaggcgcaacacgcgcatttcctgcgggacaccccgaagttttgcagcagtacaga
gatgtcggccagccggttttgattccgggaagcatgggaacgccttcgtttattttgaaa
ggcgggccgaattcgatgtcgctgtcattcggcagcgcttgccacggcgcggggcgcgtg
atgggacgcggcaaagcaaaagacagcatgagcggagaagccgttcaggaagagctggca
aagcagggcattacggtcagagccgaaagagcatccgtcatcgccgaagaagcgccgagc
gtttacaaaaacagcgacgatgtcgttgacgttgtggacagtctcggaattgctcaaaaa
gttgcccgcctgattccgatcggtgttattaaaggctga
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