Methylovirgula sp. HY1: MHY1_00963
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Entry
MHY1_00963 CDS
T11446
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mehy Methylovirgula sp. HY1
Pathway
mehy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mehy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MHY1_00963 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mehy03019
]
MHY1_00963 (rnr)
03016 Transfer RNA biogenesis [BR:
mehy03016
]
MHY1_00963 (rnr)
Enzymes [BR:
mehy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MHY1_00963 (rnr)
Messenger RNA biogenesis [BR:
mehy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MHY1_00963 (rnr)
Transfer RNA biogenesis [BR:
mehy03016
]
Prokaryotic type
tRNA degradation factors
MHY1_00963 (rnr)
BRITE hierarchy
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GFIT
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NCBI-ProteinID:
QXX74155
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Position
1020083..1022467
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AA seq
794 aa
AA seq
DB search
MIKKAGRPVANGAEPANKGKANVVADDKASGGLPTREAILSFLKRERESGQSTGKIGKRE
IARAFSIKGADRIALKRILKELEAEGAIERRRKILHRPGTLPAVVLADITTRDRNGDFLA
VPVEWDPEHGTVPKILLMPNRQRAGAATPGIGDRALIRTELLTDAAPNEPAYSGRVIKLL
QRARTQVLGIYRSDPRGGGRVLPIDKKNVGRGELSVPEGSEGGAREGDLVAVDVLRSGRL
GLPTAKVRERLGSLATEKAMSLIALHSHGIPNVFRPETIAEAEHVRPASVAEREDWRAIP
FVTIDPPDAKDHDDAVFAAPDPDPANHGGHIIHVAIADVAAYVRPRSALDREALDRGNSV
YFPDRVVPMLPERISNDLCSLKADQDRPALAIRIIVAADGKKLSHRVHRVMIRSVGKLTY
AQVQAAWDGMPGIETQALLEAVLQPLFSAYESLKAARINRAPLDLDLPERKILLKDDGTV
DRVIVPPRLEAHRLIEEFMILANVAAAEALEAARQPLIYRAHDEPSLEKLNALSEFLASI
DIKLAKGQVLTPHQFNGILARVSGTEHENIVNEIVLRTQAQAEYVTENYGHFGLHLRSYA
HFTSPIRRYADLVVHRALIRGLGLGSDGQPNMDDGELAEIAARISAAERRAMAAERETIE
RLIAAHLSAQVGTIFEGRISGVTKVGIFVKLRDTGADGFVPAATLGKDYYHYDESLHALV
SSRSGEMHRLGDEVTVKLVEAAPFAGALRFELLSEGKRAPRGSLDRAKSKRASRRDNGPA
GGAASSRINRSGRR
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
gtgatcaagaaagccggcaggcccgttgcaaacggtgctgagccggcaaacaaaggaaaa
gccaacgtcgtggcagacgacaaagcgtccggcggcttgccgacgcgcgaagcgattctg
agctttctcaagcgcgagcgcgagagcggacaaagcacaggcaagatcggcaaacgcgaa
atcgcccgcgccttttcgatcaagggcgccgatcgcatcgcgctgaagcgcatcttgaag
gagctcgaagccgaaggcgccatcgagcgccgccgcaaaattctgcatcggcccggcacc
ctgcccgccgtggtgctcgccgacattaccacgcgcgaccgaaatggcgactttctcgcc
gtcccggtcgaatgggacccggagcacgggacagttcccaaaatcctgctcatgccgaac
cgccagcgcgccggcgcggcgacgccgggaatcggcgatcgggcgctcatccgcaccgaa
ttgctgacggatgcggctccaaacgagcccgcctatagcggccgcgtcatcaagcttctg
cagcgtgccagaacgcaggtgctcggcatttatcggagcgatccgcgcggcggcggacgc
gtcttgccgatcgacaagaagaatgtcgggcgcggtgaattatccgtccccgaaggcagc
gaagggggcgcgcgcgagggcgacctcgtcgccgtcgatgtcctgcgcagcggccgcctc
ggcctgccgacagcgaaggtgcgcgaacggctcggcagcctcgccaccgaaaaagcgatg
agcctcatcgctctccattcgcatgggattcccaatgtctttcgtccggagacgattgcc
gaggccgaacacgtgcgcccggcctccgtcgccgaacgcgaagattggcgcgccattcct
ttcgtcaccatcgatccgcccgacgccaaggatcatgacgacgcggtcttcgccgcgccc
gacccagacccagccaatcatggcggccatattattcatgtcgccatcgccgatgtcgcc
gcctatgtccggccccgctcggcgctcgaccgggaagccctcgatcgcggcaattccgtc
tatttccccgatcgcgtcgtcccgatgctgccggagcggatctcgaacgatctctgttcg
ttgaaagccgatcaggaccgaccggcgcttgcgattcggatcattgtcgccgccgacggc
aaaaagctgtcgcaccgcgtccatcgggtgatgatccgttcggtcggcaagctcacttat
gcgcaagtgcaagcggcttgggacggcatgccgggcatcgagacgcaagctctgctcgaa
gccgtgctgcagcccctcttttccgcctatgaatccctgaaggcggcgcggatcaaccgc
gcaccgctcgatctcgatctgccggaacgcaagatcctgctaaaagacgacggcacggtc
gatcgggtgatcgtcccaccacgtcttgaggcgcatcggctgatcgaggagttcatgatc
ctcgcgaatgtcgccgcggccgaggctctcgaagccgcacgccagccgctgatctatcgc
gcccatgatgagccctcgctcgaaaaactgaatgcgctttcggaatttctcgcctcgatc
gacatcaagctggccaaaggccaagtgctgacgccgcatcaattcaacggcattctcgcc
cgtgtgagcggaacggagcacgagaatatcgtcaatgagatcgtcctgcggacccaggcg
caggccgaatatgtcaccgagaattacggccatttcggcctgcacctgcgcagttatgcg
catttcacctcgccgatccgccgctatgcggatctcgtcgtgcatcgcgcgctgatccgc
ggcttgggcctcggttccgacggccagcccaatatggacgatggcgaactcgccgaaatc
gcagcacgcatttccgccgccgagcggcgggcgatggcggccgaacgcgagacgatcgaa
cggctcatcgccgcgcatctttccgcccaggtcggcacgatcttcgaggggcgcatctcc
ggcgtcaccaaggtcggcatcttcgtcaagctgcgcgataccggcgccgacggcttcgtg
ccggccgcaaccctcggcaaggactattatcattatgacgagagtcttcacgcgctcgtg
tccagccgcagcggcgagatgcatcggctcggcgacgaggtgacggtgaaactcgtcgag
gccgcgccctttgccggcgccctgcgcttcgaactcttaagcgaaggcaagcgcgccccg
cgcggcagtctcgatcgcgccaaaagcaagcgcgcctcgcgccgcgacaacgggcctgct
ggcggagctgccagctcgcgcataaatagaagcggtcgaagatga
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