Methylovorus glucosotrophus: Msip34_0406
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Entry
Msip34_0406 CDS
T00943
Name
(GenBank) helicase c2
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mei
Methylovorus glucosotrophus
Pathway
mei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mei00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Msip34_0406
09124 Replication and repair
03420 Nucleotide excision repair
Msip34_0406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mei03021
]
Msip34_0406
03036 Chromosome and associated proteins [BR:
mei03036
]
Msip34_0406
03400 DNA repair and recombination proteins [BR:
mei03400
]
Msip34_0406
Enzymes [BR:
mei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Msip34_0406
Transcription machinery [BR:
mei03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Msip34_0406
Chromosome and associated proteins [BR:
mei03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Msip34_0406
DNA repair and recombination proteins [BR:
mei03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Msip34_0406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ACT49654
UniProt:
C6X934
LinkDB
All DBs
Position
418414..420657
Genome browser
AA seq
747 aa
AA seq
DB search
MRAMCDLVARRGDLDQRFTPAPTALEGMMGHTSVTSNRNASYETEIALTGEYQNIFVRGR
ADGYDPELNQLEEIKTFKGLLERMPENHRFLHWAQAKVYAALLSQERELREINTALVYYN
VSSKTEEPLSELYTAEALAAYFNAQCAQLRTWADREVAHRLRRNLQLTALQFPHPTFRTG
QRVLSESVYKTASLGKCLMAQATTGIGKTLGTLFPLLKAMPEKKLDKIFFLTAKTSGRKL
ALDAIHVIHAANPDLSLRTLELVAREKACEHPDKSCHGDSCPLAKGFYDRLPQARIQALE
RGMMDREALAAVARQHQICPYYLAQDLVSWSDVVVGDYNYYFDLYAVLYAGTVMNEWRVS
ILVDEAHNMIERGRKMYSAELDQQMFEAMRQEAPKSLKTPLEKLSQAWSSMVQPQVAPYE
VYPAIEEDFELSLQRVVTRITDYLALHPTDNAASLLNFYFDALQFVTLADAFGPHSMFDI
TLKEGRANLLQANTVLCIRNIVPAPFLKTRFDAAQSATLFSATLSPSHFYSDMLGLPDKT
PFIDVPSPFSPEQLDVRLVTHISTRYLRRRHSVMPIAQLMAKQYKARPGNYLLFVSSFDY
LQQVYELFTERYPDIPVRQQSRMMTEQDREAFINRFTETSEGIAFAVLGGAFGEGIDLPG
DRLVGAFVATIGLPQINEVNEQMRERMEEIFGAGYEYTYLYPGLQKVVQAAGRVIRTRED
TGAIYLIDDRYSQAEVRALLPTWWDIR
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtgccatgtgcgatctggttgcccgccgcggtgatctggatcagcgctttacgcct
gcgcccacggcgctggaggggatgatggggcatacttcggtcacgtccaaccgcaatgct
agctacgagaccgagattgcgctcaccggcgagtaccagaatatttttgtgcggggccgg
gccgatggttatgacccggagctgaaccagctggaggagatcaagaccttcaagggcctg
ctggagcgcatgccggaaaaccatcgctttctgcattgggcgcaggccaaggtatatgcc
gcgctactgtcgcaggagcgcgagctgcgcgagatcaataccgcgctggtgtattacaac
gtatcgagcaagacggaagagccgctaagcgagctttatacggcggaggcgctggcggcg
tatttcaacgcgcaatgcgcccagctgcgcacctgggcggaccgcgaggtggcgcatcgg
ttgcgccgcaacctgcagctcacggccttgcagtttccacatcccacttttcgtaccggg
cagcgcgtgctgtcggaatcggtatacaaaacggcaagcctgggcaaatgcctgatggcg
caggccaccaccggcattggcaaaacgctgggaacgcttttcccgctgctgaaagccatg
ccggaaaagaagctggacaagattttctttcttaccgcgaaaacctccgggcgcaaactg
gcgctcgatgccattcatgtgattcatgcggccaacccggacctgagcttgcgcacgctg
gaactggtggcgcgcgaaaaagcctgcgaacatcccgacaaaagctgccatggcgattcc
tgcccgctggccaagggcttttacgatcgcttgccgcaagcgcgcatacaggcgcttgaa
cgcggcatgatggaccgcgaggcactggcggcggtggcgcggcaacatcagatctgcccc
tattacctggcgcaggatctggtgagctggagcgatgtggtggtgggcgattacaactac
tactttgatctttatgccgtgctgtatgcgggcacggtgatgaatgaatggcgcgtgagc
atcctggtggatgaggcgcacaacatgatagagcgcggccgcaagatgtatagcgccgag
ctggatcaacagatgtttgaagccatgcgacaggaagcccccaagtcgctgaaaacgcca
ctggaaaaactcagccaggcctggagcagcatggtgcagccgcaggtggcaccgtatgaa
gtctatccggcgattgaggaagactttgagctttcgctgcagcgggtggtcacgcgcatt
accgattatctggcgctgcacccgaccgataatgccgccagcctgctgaatttctatttt
gatgcgctgcagtttgtcacgctggccgatgccttcggcccgcattccatgttcgatatc
acgctgaaagagggccgcgctaatctgttgcaggcgaatacggtgctgtgcatacgcaat
attgtgcccgcgccattcctcaaaacacggtttgacgcggcacaatcggccacgctgttt
tccgccacgctcagcccttcgcatttttacagtgacatgctgggcctgccggataaaacg
ccgtttattgatgtgccatcgccattcagcccggagcagctggacgtgcggctggtgacg
catatttccacgcgctacctgcggcggcgccactcggtgatgccgatagcccagctcatg
gccaaacaatacaaagcccggccgggcaactatctgctgttcgtcagcagctttgattat
ctgcagcaggtatacgagctattcaccgagcgttatcccgatattccggtgcggcagcaa
tcgcgcatgatgacggagcaggacagggaagcctttatcaatcgctttaccgaaacctcg
gaaggcattgcgtttgctgtgctgggcggtgctttcggcgagggcattgatttgccgggc
gatcggctggtgggtgcctttgtcgccaccataggcttgccgcagatcaacgaggtaaac
gagcagatgcgggaacgcatggaagagatatttggcgcaggctatgagtacacctatctc
taccccggcctgcaaaaagtggtacaggcggcgggccgcgtgatccgcacgcgcgaggac
acaggggccatctacctaattgatgaccgctattcgcaagccgaggtgcgcgccctgctg
cctacgtggtgggatatccgttaa
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