Methylovorus glucosotrophus: Msip34_1135
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Entry
Msip34_1135 CDS
T00943
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mei
Methylovorus glucosotrophus
Pathway
mei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Msip34_1135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mei03019
]
Msip34_1135
Enzymes [BR:
mei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Msip34_1135
Messenger RNA biogenesis [BR:
mei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Msip34_1135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
HI1480
Motif
Other DBs
NCBI-ProteinID:
ACT50382
UniProt:
C6XCV7
LinkDB
All DBs
Position
complement(1206391..1208007)
Genome browser
AA seq
538 aa
AA seq
DB search
MSTVVENAAGFAQLGLAEPILRAIADAGYTTPTPIQLQAIPQVLTGGDLLAGAQTGTGKT
AGFTLPLLHLLQGRPGKNKAGQPRCLILTPTRELAAQVEESVQTYGKYLPLKSMVMFGGV
GINPQVAQLKKPLDILVATPGRLLDHANQKTVDLSAVEILVLDEADRMLDMGFIRDIKRV
LALLPKQRQNLLFSATFSDEIKALADGLLHNPGFVEVARRNTASELVEQTVHLVRQSHKR
DMVSHLIKQNNWQQVLIFTRTKHGANRLADKLVKDGIPAAAIHGNKSQSARTKALAQFKD
GSLPVLVATDIAARGLDIDQLPQVVNFELPNVAEDYVHRIGRTGRAGATGAAVSLVDEEE
IKLLKGIERLIKREIPRVEVEGFVPSPVDKSAASEEREPRAPRPRQGQPRQGQPRQNQAR
QSQPRDSQASPSQPRQPRENAARPGGQPRQGKPAAANANGSRNGAQPQGQRRPQAGGANG
APQGNRKPQATADSGKPLSEAARHQALPQTPIFAPKPGPRHMPKGPRNGSGGGGGRGR
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
ttgtctaccgtagttgaaaacgccgctggctttgcccagctcggccttgccgaacccatt
ttgcgtgcgattgccgatgctggctacaccacgcccacccccattcaattgcaggccatt
ccccaggtattaaccgggggagacctgctggctggcgcccagaccggcaccggcaaaacc
gccggtttcaccctgccgctgctgcatctgctgcaaggccgccccggcaagaacaaggcc
ggacagcctcgctgcctgatcctgacacccacgcgcgagctggctgcccaggtagaagaa
tccgtacaaacctatggcaaatacctgccgctgaaatccatggtgatgtttggcggcgtg
gggatcaacccgcaggtcgcccaactgaaaaagccgctggatattctggtggcaaccccc
ggccgtttgctggatcacgcaaaccagaaaaccgtggacctttccgccgtcgaaatcctg
gtgctggacgaagccgaccgcatgctggacatgggctttatccgcgacatcaagcgcgtg
ctggcactgttgccaaaacagcggcagaacctgctgttctcggccaccttctccgatgaa
atcaaggcgctggccgatggcctgctgcataatccgggctttgtggaagtggcgcgccgc
aataccgcgtctgaactggtggagcaaaccgtgcatctggtgcgccagagccacaagcgc
gacatggtcagccacctgatcaagcagaacaactggcagcaggtgctgattttcacccgc
accaagcatggcgccaaccgcctggccgacaaactggtcaaggatggcatccctgcggcc
gccattcacggcaacaagagccaatctgcccgtaccaaggcgctggcgcaattcaaggat
ggcagcctgccagtactggtcgcgactgacattgccgcgcgcggactggatattgaccag
ttgccgcaagtggtcaactttgagctgccgaatgtagcagaagattatgtgcatcgtatc
ggccggaccggccgtgcaggcgctacaggcgctgccgtatcgctggtcgatgaagaagaa
atcaagctgctgaaaggcattgagcgtctgatcaagcgcgaaattccacgtgtggaagtc
gaaggctttgtaccatcgccggtagacaaatcagccgccagcgaagagcgcgagccacgc
gctccgcgccctcgtcaaggccaaccgcgtcagggccaaccacgccagaatcaagcccgc
caaagccagccgcgtgattcgcaagcttccccatcgcaaccccgccagccaagagaaaat
gcagcccgtcccggtggtcagccacgccagggcaaaccggctgcggccaatgccaacggc
tcacgcaacggcgcccagccgcaaggccaacgccgcccgcaggctggcggcgccaatggc
gccccgcaaggcaaccgcaaaccgcaggcaactgctgattcaggcaagccattatctgaa
gcagcccgtcatcaggccctgccacagacaccgatatttgcccccaagcccggcccacgc
cacatgccaaagggtccacgtaacggcagtggcggcggaggtggccgcggccgatga
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