Methylovorus glucosotrophus: Msip34_1264
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Entry
Msip34_1264 CDS
T00943
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mei
Methylovorus glucosotrophus
Pathway
mei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Msip34_1264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mei03019
]
Msip34_1264
03009 Ribosome biogenesis [BR:
mei03009
]
Msip34_1264
Enzymes [BR:
mei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Msip34_1264
Messenger RNA biogenesis [BR:
mei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Msip34_1264
Ribosome biogenesis [BR:
mei03009
]
Prokaryotic type
rRNA processing factors
Msip34_1264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACT50510
UniProt:
C6XD85
LinkDB
All DBs
Position
complement(1362963..1365704)
Genome browser
AA seq
913 aa
AA seq
DB search
MKRMLFNATQSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGIITRIEPSLEAAFVNY
GTDRHGFLPFKEVARSYFQNDSDGRARIQDVLKEGQELIVQVDKDERGNKGAALTTFISL
AGRYLVLMPNNPRGGGVSRRIEGEDRNELRDLMAQLEVPNGMSIIARTAGIGRNIEELQW
DLNYLLQLWTAIEGASTMQSGPFLIYQEGSLVIRAIRDYFQPDIGEILIDTADIHEQAVQ
FMNHVMPGNVSRVKLYRDEIPLFSRFQIEHQIETAFSREVRLPSGGAIVIDHTEALVSVD
VNSGRSTKGSDIEHTAFNTNLEAADEVARQLRLRDLGGLVVIDFIDMENQRNQREVENRL
RDALHHDRARVQTGKISRFGLLELSRQRLRPSLGESNHIPCPRCHGTGHIRGIESTALHI
LRITQEEAMKENSAIIQVQLPVEAATFLLNEKRAEIHKIEQRSGVQVVLIPNIHMETPNY
NISRIRSDDVNEETSRASYQMVELPTEGEYNPAAQQEVKAVRAEAAVKGITPASPAPIAT
EKAVEVPAAPSLFGRFKNWLSKITETKEEVVAPETTKQRNDNNRNNRNQPRNARNNRNGR
NGERGERPAAERNAERGGERNNERAERGERPANERSERQERGNRQEPRQQEGREPRQQNQ
PRAERGEPREKPAIASPAPAATQQAANGEAGNEPRSRRGRNGRRERPAREPRENQARKAA
DDAAIGAPVAEDVAQQVAAPVAAAVEIVAQNNTVSEAPAVVETVAAAPAVETSPAVEPVA
KAVEPQQADLALVSDTPAPVVAAEPVAAVAEAAPAAEPVAESVVVAEKPEATDKPEKKPR
APRRRKAEAETKPLDLAASGLQLVETKADAPVAAAPVEAEPAAPRSRKPAAWQQKATSDE
SAEAPLVLIETQK
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgcttttcaatgcgacacagtcggaagaactacgtgtcgccatcgtcgat
ggtcaaaaactgatcgacctcgacatcgaatccgctggcaaggaacaacgcaagagcaat
atctacaagggtatcatcacccgcatcgagccttctcttgaggctgcatttgtcaattac
ggtactgaccgtcacggttttctccccttcaaggaagtcgctcgcagctatttccagaac
gacagcgatggccgcgcccgcattcaggatgtactgaaggaaggccaggagcttatcgtc
caggttgacaaggacgaacgtggcaacaagggcgcagccctcaccacctttatttccctg
gcgggccgttatctggtgctgatgccgaacaaccctcgtggtggtggtgtatcgcgccgc
atcgaaggcgaagaccgcaatgaactgcgtgatctgatggcccagctggaagtgcctaac
ggcatgagcatcattgcccgtaccgcaggtattggccgcaatatcgaagagctgcaatgg
gacctgaactacctcttgcaactgtggacagccattgagggtgcctccaccatgcaaagc
ggccctttcctgatctatcaggaaggcagcctggtcattcgtgccatccgtgattacttc
cagccagacattggcgaaatcctgatcgacaccgccgacattcacgagcaagccgtgcag
ttcatgaaccacgtcatgccgggcaatgtatcgcgtgtgaagctgtatcgcgacgagatt
cctttattctcccgcttccagatcgaacaccagattgagactgcgttttcacgtgaagtg
cgcctgccttccggcggcgccatcgtgattgaccacacggaagccctggtatccgtcgac
gtcaactccggtcgttccaccaaaggcagcgacattgagcacaccgcgttcaataccaac
ctggaagctgccgatgaagtagctcgccagctccgtctgcgcgacctgggtggtctggtg
gtgatcgacttcatcgacatggaaaaccagcgcaatcagcgcgaagtcgaaaaccgcctg
cgcgacgccctgcatcatgaccgtgcccgcgtacaaaccggcaagatttcccgcttcggc
ctgctggagctgtcacgccagcgcctgcgtccaagcctgggcgaatccaaccatatccca
tgtcctcgttgccatggcacaggccatatccgcggcatcgagtccactgcgctgcatatc
ctgcgaatcacgcaggaagaagccatgaaggaaaacagcgccattattcaggtgcagctg
ccggtggaagcagcaaccttcctgctgaatgaaaagcgtgccgagatacacaagatcgag
caacgctccggtgtacaggttgtgctgatccctaatattcacatggaaaccccgaactac
aacatctcgcgtattcgcagtgatgatgtcaacgaggaaaccagccgcgccagctaccag
atggtagagctgccaaccgagggtgaatacaacccggctgcgcaacaggaagtcaaagcc
gtgcgcgccgaagctgccgtcaagggcattacccctgcatctccagcgccgattgccacg
gaaaaagcagttgaagtgcctgccgccccttccctgtttggccgtttcaagaactggctt
agcaagatcaccgaaaccaaggaagaagtggttgcgcctgaaaccaccaagcaacgcaac
gacaacaaccgtaacaatcgcaatcagccacgcaatgcgcgtaacaaccgcaatggccgc
aatggtgagcgcggtgaacgtccagctgcggaacgcaatgcggaacgtggtggcgaacgc
aacaacgagcgcgcagaacgcggtgagcgcccagccaatgagcgtagcgaacgccaggaa
cgtggcaatcgccaggagccacgtcagcaggaaggccgtgaaccacgccagcaaaaccaa
ccgcgtgcagagcgtggtgagccacgtgaaaaaccggccatcgcatctccagcgcctgca
gcaacccaacaagccgccaatggcgaagctggcaatgagccacgcagccgtcgcggccgt
aatggtcgccgtgagcgcccagcacgcgagccacgtgaaaaccaggcacgcaaggcagcc
gatgatgccgctattggcgccccggtagcagaggatgtggctcaacaagtggcagcacct
gtcgcggccgcagttgaaatcgttgctcaaaacaacaccgtgagcgaagcgcctgctgtc
gtggaaacagttgcagcggcacctgccgttgagaccagccccgcagtcgagcctgttgcc
aaggcagtggaacctcagcaagcggatctggcactggtcagtgataccccagctccagta
gtggcagcagaacctgttgccgcagtggctgaagcagcaccagccgcagagcctgtagcc
gaatctgttgtagtggcagaaaaaccagaagctactgacaagcccgagaagaaacctcgc
gcaccacgccgccgcaaggctgaggcagaaaccaagcctctggatctcgcagcaagtggc
ttgcaacttgtggaaaccaaagccgatgcgccggtagcagctgcgccagtggaagcagaa
cctgcagccccacgcagccgtaaaccagcggcatggcagcaaaaagccaccagcgatgaa
agtgctgaagcgccactggtattgatcgaaacacagaagtaa
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