Methylovorus glucosetrophus: Msip34_2574
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Entry
Msip34_2574 CDS
T00943
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mei
Methylovorus glucosetrophus
Pathway
mei03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Msip34_2574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mei03400
]
Msip34_2574
Enzymes [BR:
mei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Msip34_2574
DNA repair and recombination proteins [BR:
mei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Msip34_2574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
DNA_primase_S
DUF4985
Motif
Other DBs
NCBI-ProteinID:
ACT51811
UniProt:
C6XB41
LinkDB
All DBs
Position
2707963..2710575
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AA seq
870 aa
AA seq
DB search
MGLNHYWQKRNFNITPEPSGQVAEAGDTLAFYIQRHHARRLHYDFRLELDGVLKSWAIPK
GPTLDPKEKRLAVHVEDHPLEYGHFEGQIPEHQYGAGKVILWDCGTWEPLEDPHVGYQKG
ALKFMLHGEKLSGKWALVRMGKTPAEGSSEKENWLLIKEKDDVAQSGEQANITENRPESI
RRLFSGDTHRPLKSSDKARRVSVASTLSSRQSAGAHHASPDLDGEVGKTQPMPTTMQPQL
ALLAKKAPVGEHWLTEVKFDGYRMLARCEDGEVKLYSRNGHDWTAKWKGIADALKQLPID
QAWLDGELVALQPNGKISFQALQDAMQANNAATLAYFVFDLMYLNGHDLRSQPLIKRKAL
LKTVLQRAADDSQAPSPLHFSDHIVGNAPEVFDHACLHDLEGIIAKRAESPYQPRRTEDW
LKIKCGLRQEFVIGGYTDPAGSRQGFGALLLGVYDAEGALHYAGRVGTGFTETTLAQVSK
QFSRLQRASSPFTGKLTGLQMRGVHWLTPKLVAEVRFAQWTDSQIVRHAAFVGLRQDKPA
REIVHETPANPPPPTEDAASSPEQSGQQRPQRSGSVREIAGVRLTHPGKILFAQAGLTKQ
DLAHYYEEIAPWILPQLQGRPLSLVRCPTGAGQQCFFQKHAAMTIPDNVRRIQVPVSGFS
DDYMVVDDLPALICLVQMGVLEIHTWGSREENLEQPDRIIFDLDPDEALPWTTVVESAQL
VHALLQALGLESFVKTTGGKGVHVVIPIVPEHSWQTIKAFSKSAAQYLEKQLPDRFTSNM
SKEKRTGKVFIDYLRNAPGATAIAAYSSRAKPSATVSVPISWEELNMGVRSDSFTIANLP
ERLARQKQDPWQDYERLRQHITTAMLEMFT
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgaatcattactggcaaaagcgtaacttcaatatcaccccggaaccgtctggc
caggtcgccgaggctggcgacacgctggcgttttatatccagcgccatcatgcgcggcgc
ttgcactatgatttccgtctggagttggatggcgtgctgaaaagctgggcaatacccaaa
ggtcccaccctggaccccaaggaaaagcgactggcggtacatgtggaagatcatccgctg
gaatacgggcactttgaagggcagattcccgaacaccaatacggcgcgggcaaggtcatc
ttgtgggattgtggtacctgggagccattggaagatccccacgttggttaccagaaaggt
gcgctcaaattcatgctgcatggtgagaagctatccggcaaatgggcactggtgcggatg
gggaaaacgcctgccgagggttcttccgaaaaggaaaactggctgctgatcaaggaaaag
gatgacgtggcgcaaagcggtgagcaggccaacatcaccgaaaatcggccggagagcata
cgcagactgttcagtggcgatactcaccggccattgaaaagttcggacaaggcccgccgc
gtctcggtagcctcaacattgagtagccgccagtctgctggcgcgcaccacgcatcccct
gaccttgatggcgaagtcggaaaaacgcagcccatgcccaccaccatgcaacctcaactg
gcgctgctggcaaaaaaagcacccgtaggtgagcactggcttacagaagtaaaattcgac
ggctaccgcatgctggcgcgctgtgaagatggggaggtaaagctttactcgcgcaatggc
cacgactggacggcaaagtggaaaggcattgccgatgcgctcaaacaattgccaatcgat
caggcctggctggatggcgaactggtggcgttgcaacccaatggcaagatcagttttcag
gcgctgcaagacgccatgcaagccaataacgccgcgacactggcgtattttgtatttgac
ctcatgtacctcaacggtcacgacttgcgctcccagccgctgatcaagcgcaaggcgcta
ctgaagacagtgcttcaacgcgcagctgacgatagtcaggccccctctcccttacacttc
agcgaccatattgtcggcaatgctccggaagtattcgaccatgcctgtctgcatgatctt
gagggcatcattgccaagcgcgcggaatccccttatcagccgcgacgcacggaggactgg
ctgaaaataaaatgtggcttgcggcaggagtttgtcatcggcggctataccgatccagcg
ggtagtcgccagggatttggcgccctgctgctgggagtgtatgacgccgaaggtgccctg
cattatgccgggcgcgtgggaacaggctttaccgaaaccacgctagcccaggtgagcaag
cagttcagccgcctgcaacgcgcaagttcgccgtttaccggcaagctgaccggcttgcaa
atgcgaggcgtccattggctcacgcccaagctggtagccgaagtgcgtttcgcacagtgg
acagacagccagatcgtgcggcacgcggcttttgtcggcctgcgccaggacaaaccagcc
cgtgaaatcgtgcacgaaacgccggccaacccgccgccaccaaccgaagatgcggcatct
tccccagagcaatccggccagcaacgtccacagcgcagtggctccgtccgcgaaatcgcc
ggtgtgcggctgacccatccgggcaagattctgttcgcgcaggccggactgaccaagcag
gatctggcgcattactacgaagaaatcgccccatggatattgccgcagctgcaaggtcgc
cccttgtcgctggtgcgctgcccgacaggcgccggtcagcagtgttttttccagaaacat
gccgccatgaccatccccgacaatgtcaggcgcatacaggtgccggtaagcggattttca
gatgactacatggtggtggatgatctgccagcgcttatttgcctggtgcaaatgggcgtg
ctggagatacacacctggggctcgcgcgaggagaatctggaacaaccggatcgcattatt
ttcgaccttgacccggatgaagccctcccatggacgaccgtggtggagagcgcacaactg
gtgcatgcattgctgcaggcgctaggcctggagagcttcgtcaaaaccaccggtggtaaa
ggcgtacacgtcgtgatcccgattgtgcccgaacacagctggcagacaatcaaggcattc
agcaaatcggcagcgcaatatcttgaaaagcaattacccgatcgctttacttccaatatg
tccaaggaaaagcgcaccggcaaagtgttcatcgactatctgcgcaatgcgcctggggcg
acagcgattgccgcttactccagccgggccaaaccaagcgctaccgtgtcggtgcctatt
tcatgggaggagctgaacatgggggtacgctcggactccttcaccatcgccaatcttcca
gagcgccttgcgcgtcagaaacaggatccctggcaggattatgaacgcctgcggcaacac
atcactacggccatgctggagatgtttacctga
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