Methyloprofundus sp. INp10_methR40d: methR_P1807
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Entry
methR_P1807 CDS
T07025
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mein
Methyloprofundus sp. INp10_methR40d
Brite
KEGG Orthology (KO) [BR:
mein00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mein03019
]
methR_P1807
Enzymes [BR:
mein01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
methR_P1807
Messenger RNA biogenesis [BR:
mein03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
methR_P1807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
ResIII
AAA_23
NACHT
AAA_25
FtsK_SpoIIIE
Cas3-like_C_2
ABC_tran
SRP54
Motif
Other DBs
NCBI-ProteinID:
BCG64041
UniProt:
A0A7R7AGJ4
LinkDB
All DBs
Position
complement(2017952..2021854)
Genome browser
AA seq
1300 aa
AA seq
DB search
MSSQQLLQQISKNLKKTLNKDRQPIKRQLDRLRNELSKGKDVQEKLQQLELKLKQSIQKR
NARLESFPVLEFPDLPVSGKKDEIAALIQQNQVVIICGETGSGKTTQLPKICLSIGRGAA
GLIGHTQPRRIAARTVADRIAEELKQPIGQAVGYKVRFQDKTRDSSLIKLMTDGILLAES
QNDPYLNQYDTIIIDEAHERSLNIDFLLGYMRWLLPRRPDLKLIITSATIDPERFASHFF
NAPIINVSGRTFPVEMRYRPIEQDEEEDETTNDVQLAILDAVDELHRDITGDILIFLSGE
RDIRETTESLRKHNNGRFEVLPLYSKLSVNEQERVFKSKAGKRRIVLATNVAETSLTVPG
IRSVIDVGHARISRYSHRSKIQRLPIEKVSQASANQRAGRCGRVADGICIRLYSQDDYLS
RPEFTEPEIKRTSLAAVILQMASLKLGDIRDFPFVEPPEDKMIRDGLTTLQEVHALDKSG
KITAVGLQLSKLPVDPKLARMLLAAGELSCLNELSIIVSGLSIQDPREKPADKMQQADAK
HAEFIAEGSDFLSFVNIWNTVEERKKHLSNNQLRKWCKQKFLSYVRLREWHDVHAQILQV
IKGELKLKVNSTEASYEAVHQALLPGLLSNIGFKHEQYEYLGARNLKFYIFPGSGQYKLR
PKWLMAAEQVETSKVYGRCVAKIEPQWIERCAEHLIKKNHFDPHWEKKVARGAIYERTLL
FGLTLQSRRKIPYEHVDPKAARQMFIRNALVEHDYQTRAPFFKANEALLEEVGYIQHKGR
RVDLIEDEEWLYDFYEQKIPETVVNGITFDQWRKKAEREQPKLLFLSKEDLTRHDEGHIS
SWEYPDEKQVGRLVLSLQYRFELGHEEDGVTLIIPVHQLNQLTEQPFEWLVPGLLSEKLT
ALIKGLPKQLRKHFVPVPNTVERCLEVEPEGKGSLYEWLAMRLRKLTGEAIPLTAWNKEI
LTDHLRMNFRVIDEQGQQIDNSRDLKALQRKYTEAAGDSFNQLAEDELNYTGCIKWVFDE
LPEVYQFEQNGQNFIGYPAIIDEGDSVGVRILDTQEKAALQHERGLLRLFQLQLKKEAKY
ILKNLPFSPEAELAYNRLAKHPDLSKDIMSESYKQDMLALIIKSVFVSGKTIRTEQQFEQ
SLRENKTELMNIANKIGESVVQALANYAQIKQKIASFPQQEPAVQDVQQQLARLFYQGFL
TLTAYEHVRHFPRYLKAITARMEAMLQQPTKDQQKMQEMAKFQQWFWQSVEKRQKNELVN
PESEAFRWMIEEFRVSLFAQQLKTPYPISAKRLEKAWNSL
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgcaacaactgctccagcaaatttccaaaaatctcaagaaaaccctaaacaaa
gatagacagcctattaaacggcaattagaccgtttgcgtaatgaactcagtaaaggtaaa
gacgttcaagaaaaactgcaacaactagagctcaagctcaagcagtcgatacaaaaacgt
aatgcccgtttagaaagttttccagtattggaatttcctgacttacccgtttcaggtaaa
aaagatgagattgctgcactgattcagcagaatcaagtggttattatttgtggtgaaacc
ggctcaggtaaaaccacccaattacctaaaatttgtttatccattggtcgtggtgctgca
ggattaataggccatacgcaaccaaggcgtattgctgcgcgtaccgtagcagatcggatt
gctgaagagttaaaacaacctattggccaagccgtcggttataaagtgcgtttccaagat
aaaacccgcgatagctcattaataaaattaatgaccgatggaattttgctggccgaatca
caaaatgatccctacctcaatcaatatgacaccatcattattgatgaggcgcatgaacgt
agtttaaatattgattttctcttgggttatatgcgttggttattaccacgccgacctgat
ttaaaactgattattacttccgcgaccatagacccagaacgctttgccagccactttttc
aacgctccgattattaatgtctccggacgtacttttcctgtggaaatgcgctatcgaccg
atagaacaagatgaggaagaagatgaaaccactaatgatgtacagctcgccattttagat
gcggtggatgaattacaccgtgatattaccggcgatattcttattttcttaagtggtgaa
cgtgatattcgggaaactactgagtccttgcgcaaacataataacggtcggtttgaagtc
ttgccactctattccaaactcagtgttaatgagcaagagcgggtctttaaaagtaaagca
ggtaaacgtcgaatcgtactggcaactaatgtcgcagaaacctcgctaacagtcccaggc
attcgtagtgttattgatgttggccatgcgcgtataagtcgttatagtcatcgcagtaaa
atccagcgtctccccatagaaaaagtatcacaagccagtgctaatcaaagggcagggcgt
tgtggccgggtcgctgacgggatttgtattcgcctttattctcaggatgactatttaagt
cgccctgaatttaccgagcctgagattaaacgtactagtttagccgcagtcatcttgcag
atggctagcttgaaactgggtgatattcgcgactttccttttgtagagccgcctgaagat
aaaatgattcgggatggcttaacgactttacaagaagtgcatgcattggataaatctggc
aagattaccgctgtgggtttgcagttatctaaactgccagttgacccaaaattagcacgt
atgttgctcgcggctggtgaattatcttgtttaaatgaattgagcattattgtctctggc
ttgagtattcaagatcctcgtgaaaaaccagctgataaaatgcaacaagcggatgccaag
catgctgaatttattgccgagggttcggattttcttagctttgttaatatctggaatacg
gtagaagagcgcaaaaaacatttatctaataatcaattgcgtaaatggtgcaagcaaaaa
ttcctttcttatgtgcgtttgcgtgaatggcatgatgtgcatgcgcagattttacaagtc
attaaaggtgaacttaagctgaaagtgaatagcacggaagcatcttatgaagcagtacac
caagcgctattaccaggtctattatccaatattggttttaaacatgagcaatatgaatat
ttaggtgcacgtaatttaaaattctatatttttccaggttctggccaatacaaattacgt
cctaaatggttgatggcagctgaacaagttgagaccagcaaagtgtatggccgctgtgtg
gccaaaatagaaccacaatggattgaacgttgtgccgagcatttaatcaagaagaaccac
ttcgatccacactgggaaaaaaaggttgcgcgtggtgctatttatgagcgtactttattg
tttggtttgaccttacaaagtcggcgcaaaattccctatgaacatgtagatcccaaagca
gcaagacaaatgtttattcgtaatgctttggtggaacatgattatcaaacccgagcgcca
ttttttaaagccaatgaagcattattagaagaggtcggctatattcaacataaaggtcgc
cgagttgatttaatcgaagatgaagaatggttgtatgatttttacgaacaaaaaattcca
gaaacggtggttaatggcattacctttgaccaatggcgcaaaaaggctgaacgcgaacag
ccaaagctattatttttaagcaaagaagatttaactcgccatgatgaaggccatatcagc
tcttgggagtaccccgacgaaaagcaagtagggcgcttagtactgtctttacaatatcgc
tttgaattagggcatgaggaagacggagtaacacttattattcctgtgcatcagttgaat
caattaactgaacagccgtttgagtggttagtacctggcctattatcagaaaaattgacc
gctctgatcaaaggtctacccaaacaattacgtaaacattttgtgccagtaccgaatacg
gtagaacgctgtttggaagtggaaccagagggtaaaggctctttatatgaatggctagcg
atgcgcttacgaaaattgactggcgaagcgattccattaactgcatggaataaagagata
ctcaccgatcatttgcgcatgaattttcgggtaatcgatgagcaaggacagcaaattgat
aatagtcgtgatcttaaagccttacaacgtaaatataccgaagcagcaggtgatagcttt
aatcaattggctgaagatgagttaaattatacgggctgtataaaatgggtctttgacgaa
ttacctgaagtctatcaatttgaacaaaacgggcaaaattttattggctaccctgccatc
attgatgaaggcgattcggtcggtgtacgtattttagatacccaagaaaaagccgctttg
cagcacgaaagaggtttgctacgtttgtttcaattacaattgaaaaaagaagccaaatat
atactgaaaaatttaccattttcacccgaagcagaattagcctataaccgtttagccaag
catcctgatttaagcaaagatattatgagtgaaagctataaacaagatatgctagctttg
attattaaatccgtatttgtcagtggcaagactattcgtactgaacaacaatttgagcaa
agtctgcgcgagaacaaaactgaattgatgaatatagctaataaaattggtgaaagtgtg
gtgcaagccttggcaaattatgcgcaaatcaaacaaaaaattgccagctttccacagcaa
gaacccgcagtacaggatgtgcagcaacaattagcgcgtttattttaccaaggcttttta
accttgacggcttatgagcatgtgcgccattttccacgctatttaaaagctattaccgca
cgtatggaagccatgctgcaacagcctaccaaagatcagcaaaaaatgcaggaaatggca
aaatttcagcaatggttttggcagagtgtcgagaaacggcaaaagaatgagttagtcaat
ccggagagtgaagcttttcgttggatgattgaggaatttagagtgtcattgtttgcccag
caactgaaaacaccttacccaatatctgcaaaacgcttagaaaaggcttggaatagtctg
tag
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