Methyloprofundus sp. INp10_methR40d: methR_P1986
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Entry
methR_P1986 CDS
T07025
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mein
Methyloprofundus sp. INp10_methR40d
Pathway
mein03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mein00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
methR_P1986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mein03019
]
methR_P1986
03009 Ribosome biogenesis [BR:
mein03009
]
methR_P1986
Enzymes [BR:
mein01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
methR_P1986
Messenger RNA biogenesis [BR:
mein03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
methR_P1986
Ribosome biogenesis [BR:
mein03009
]
Prokaryotic type
rRNA processing factors
methR_P1986
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BCG64218
LinkDB
All DBs
Position
2221302..2223560
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AA seq
752 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDFDIEHPSQEQKKSNIYKGIITRIEPSLEAAFVNY
GVDKHGFLPLKEVSPTAVNSDDPNLSRAKIKELLKEGQEVIVQIEKEERGNKGAALTTYI
SLAGTYLVLMPNNPKAGGISRRIEGETRNELRDAMAGLEVPEDMGLIVRTAGCGKSTEEL
QWDLNYLLQLWEAIDRSSKEQNNPFLIFQESNVIIRALRDHLRADIDEILIDKESSFKLV
HTFLKQVMPHYLNKAKLYSDDVPLFNRYQIESQIETAYSREVALPSGGELVIDHTEALTS
IDINSARATKGSDIEETALNTNLEAADEVARQLRLRDLGGLFVIDFIDMLANKNQRAVEN
RLRDALKIDRARVQTSRISRFGLLEMSRQRLRPSLGDTTQLTCPRCNGQGEIRNVESVAL
SVLRILEEEAMKSGTEKVIAHLPIECATFLLNEKRPSIDQIESRLKVRIIVLPSKHLETP
AYDIERIKSKDDDGSAEIASYTQIKAEETNAPDFAKKTAPKSEQAAIKEFLPDAPAPVQN
KKNSASLISRFWDKLVGSSSAESETTASESPSQKNLSEPTEKANTEKNNSNNNNRRNSNN
RRNRNRNTNRDRPNTQNNKQNNKPQGNKKTPNTESSPAQQEPTTKPVEKNATETDSKAKS
QPKKQNRRGYNRNSRTINGSVQAKKNNENTQQNTANPNTANKTVELTNQPEPQSYAANYQ
KNFSSIKASESPAPEPEATTTKKAVVTDKSED
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcgacgcagcccgaagaactgcgtgttgcattggtagac
ggtcaaaagctttatgattttgacattgaacacccttcacaagaacaaaaaaaatctaat
atatataaaggtattatcacccgtatagagccaagcctagaggctgcctttgttaattat
ggtgttgataaacatgggtttttacctctaaaagaggtttcacctactgcggtaaactct
gatgaccccaaccttagtcgcgctaaaatcaaagagctactaaaagaaggccaagaagtc
atcgtccaaattgaaaaagaggaacgcggtaataaaggcgcagctctaaccacatatatc
agtctggcaggaacttacctagtcttaatgccaaacaaccctaaagcaggtggcatttca
cgacgcattgaaggtgaaactcgtaatgaattgcgtgatgcgatggcaggccttgaagtt
cctgaagatatggggcttattgtacgcacagctggttgcggcaaaagcacagaggaactg
caatgggatttaaactacttgctccaactttgggaagcgattgatcgctcttctaaggaa
caaaataacccctttcttatttttcaagaaagcaacgttattattcgtgctttgcgtgat
catttacgtgccgacattgatgagattcttatcgataaagaatcatcatttaaactagta
catactttcttaaagcaagtaatgccgcattacctgaataaagccaagctttacagtgat
gatgtaccactctttaatcgctatcaaattgaatcacaaattgaaacggcctatagccgc
gaagtagcactaccatctggcggtgaactggttatagatcacactgaagcactcacttca
attgacattaactccgcacgtgccactaaagggagtgacattgaagaaaccgctctcaac
accaatcttgaggctgccgatgaagttgcacgccaattaagattacgtgatcttggaggt
ttgtttgttatcgatttcattgatatgctggccaataaaaaccaacgtgcagtggaaaac
agattacgtgacgctttaaaaatagaccgtgctcgtgtacaaaccagccgtatttcgcgt
tttggtttattagaaatgtcacgccaacgtttacgcccttcactaggcgataccacacaa
ttaacttgcccacgttgtaatggtcaaggtgaaattcgtaatgtggaatcagtcgcatta
tcagtactacgtatccttgaagaagaggctatgaaaagtggcactgaaaaagttatcgca
catttacccattgagtgcgccacctttttactcaatgaaaagcgcccttctattgatcaa
attgaatctcgcttaaaagttcgtatcattgttttaccaagcaaacatttagaaacacct
gcttatgatattgagcgcatcaagtctaaagatgatgatggcagtgctgaaatagcgagt
tacacgcaaataaaggcagaagaaactaatgctccggatttcgccaagaaaaccgcgccc
aaatctgagcaggctgctatcaaagaatttctacctgatgcgcccgccccagtacaaaac
aaaaagaactctgctagtttaattagtcgcttctgggataaacttgtgggcagcagctct
gcagagtctgaaacaacagcatcagagtcaccatctcaaaaaaatctaagcgaaccaact
gaaaaagcaaatactgagaaaaacaacagtaacaataataaccgcagaaattccaataac
cgcagaaatcgtaacagaaacactaatcgcgatcgtccgaatacgcaaaacaacaagcaa
aacaacaaaccccaaggaaataaaaaaactccgaatactgaatcctcacctgcacaacag
gaaccaacgacaaagccagttgaaaaaaatgcaactgaaactgattctaaggcaaaaagt
caaccaaaaaaacaaaaccgcagaggctataatcgcaactctagaactatcaatggtagc
gtacaagcaaagaaaaataacgaaaatactcagcaaaatactgccaatccaaatacagcc
aacaaaacagttgaattaacaaatcagcctgaaccacagtcttatgctgcaaactaccaa
aaaaacttttcttcaataaaagcgagtgaatcacccgcacctgaacctgaagcaactaca
actaaaaaagcagttgttaccgataaatcagaagattaa
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