Methyloprofundus sp. INp10_methR40d: methR_P3234
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Entry
methR_P3234 CDS
T07025
Name
(GenBank) transcription-repair coupling factor, superfamily II helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mein
Methyloprofundus sp. INp10_methR40d
Pathway
mein03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mein00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
methR_P3234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mein03400
]
methR_P3234
Enzymes [BR:
mein01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
methR_P3234
DNA repair and recombination proteins [BR:
mein03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
methR_P3234
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
ERCC3_RAD25_C
PpnN_C
Glyco_tran_WecG
DUF596
Motif
Other DBs
NCBI-ProteinID:
BCG65402
UniProt:
A0A7R6WD02
LinkDB
All DBs
Position
complement(3591212..3594673)
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AA seq
1153 aa
AA seq
DB search
MSDTQAIFTPKIPHKIKQPVFWSGLQGCSDSLAIATAIKAEERLFVVLTPDSQTALRLEH
ELSFFLQDEYPILHFPDWEILPYDVFSPLPEIVSERLKSLAKLPEVTRGALVLSVATLMH
RLAPREHVLANSFVINNGSQFNLELNRIKLEAVGYQCVSQVVQHAEFAVRGSIIDLFPMG
SQYPFRIELFDEDVESIRTFDPETQRSLGKVEAVELFPAREFPFTDEAINYFRQGFREAF
PDSYQKNTLYQDVSKGITPSGIEAYLPLFVESTDTLFDYLPAKTVFILPETIAQATQQFS
AEIAERFEQRKYDLERPLLAPELLYIQADEFVEQLHKFRRIQLGGLAEQAEHVEWLAESV
ALPEVTIDARLKDPASRLKAFLANTESRVLFAAETAGHREALQDKLRSFKIKAKQVDSWQ
QFLQQENSPCIVVAPLDHSLYLQQAGLAIITETQLMGDKAQQRRRRKKSAAHELEKIVNN
LNELTVGSPVVHQEHGVGRYLGLQVLQFGDIDAEFLTLEYANEDKLYVPVSALDVIGRYT
GVNPDTAPLHRLGGDQWSKAKKKALEKIHDVAAELLDIHAKRALNKGHAFAYEQSEYLAF
ADAFPFEETPDQQTSIDSILEDMSSGQPMDRVICGDVGFGKTEVAMRATFIAAQSGRQVA
VLVPTTLLAQQHFQNFRDRFADWPFRVEVLSRFQTPKQQKAIIAELADGKVDIVIGTHKL
LSKEIKYRDLGLVIIDEEHRFGVRQKEHFKAIRQEVDLLTLTATPIPRTLNMAMSGLRDV
SIIATPPPNRHAIRTFISEWIDSLVKEACQREIKRGGQMYFLHNDVKSMDKMARELEKLV
PEARIEIAHGQMPERELERIMLDFYHQRFNVLLSTTIIESGIDIPTANTIIINRADKLGL
AQLHQLRGRVGRSHHRAYAYFITPPKKLMSKDAVKRLEALETSGELGAGFLLSTHDMEIR
GAGELLGDGQSGQIQEIGFTLYTELLERAVNALKSGKQPELDAPMHTGTEVDLQTAALIP
EDYLPDIHARLVLYKRIASTDSKDELKALQIEMIDRFGLLPEQTKALFAVTELKQQASDI
GVKKIDAHGEGGRLLFAADPKLNMQQLLMLIQTQANIYKFEGGDKLRFTQKFATTDDKIA
FISTLLTQLTDDS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacactcaagccatttttacccctaaaatccctcataaaataaaacagcccgta
ttttggagtggcttgcaaggttgtagcgattccttagcgattgcaaccgcaattaaagca
gaagagcgtttgtttgtggtattaaccccagattcacaaacagctttacgactggagcat
gagttatcgttctttttgcaggatgagtatcctattctgcatttccctgattgggaaatt
ctgccttatgatgtattttcgccattacctgaaattgtttcagagcgtttaaaatctttg
gctaaattacctgaggtgactcgaggggctttagtattatcggtagcgactctaatgcat
cgcttggcacctagggagcatgttttagcgaatagctttgtgataaataatggtagccag
tttaatttggaattaaatagaattaagctggaagctgttggttatcagtgcgtttcacaa
gtagtgcaacatgccgaatttgcagtgcgtggctcgattattgacctatttccaatgggg
agccaatacccatttcggattgaattattcgatgaagatgtggagtcgattcgcactttt
gatcctgaaactcagcgttcattgggtaaagtagaggcggtggaattatttccggcacga
gaatttccttttaccgatgaggcgattaattattttcgccaaggatttagagaggcgttt
cctgatagttatcaaaaaaatacactttatcaagatgtgagtaaagggattacgccgagt
ggtattgaagcgtacttgcctttattcgttgagagtaccgatactttatttgattatttg
cctgccaaaactgtctttattttgcctgaaacgattgcacaagcaacacagcaattttcg
gctgaaattgcggagcgttttgagcagcgaaaatatgacttagagcggccattattagca
cctgaattattgtatatacaagcggatgaatttgttgagcagttacataaattccgtcgt
attcagctaggtgggctagcggaacaagccgagcacgtagaatggctcgctgagagtgtg
gcattgcctgaggtgacaattgatgcgcgcttaaaagatccagcgagtcgtttaaaagct
tttttggcgaataccgagagtcgggtattgtttgctgcagaaacagcggggcatcgtgag
gcattgcaggataaattacgctcttttaaaattaaagccaagcaggtagacagctggcag
cagtttttacagcaggaaaattcaccttgtatcgtggttgcgcctttagatcatagttta
tatttacaacaagctggtttggccattattaccgaaactcagttaatgggtgataaggca
caacagcgacgtaggcgcaaaaaatctgccgcgcatgagttggaaaaaatagttaataac
ctgaatgaattgacggtaggctcacctgttgtgcatcaggagcacggtgtggggcgttac
ttaggactacaggttttacaatttggtgatattgatgctgaatttttaacgctggaatat
gctaacgaagataagttgtatgtgccggtatcagcgctagatgtaattgggcgttatact
ggagttaatcctgatacagcaccgctgcatcgtttgggtggtgatcaatggagtaaggcg
aagaaaaaagcgttagagaaaattcatgatgtagcggctgaattactggatattcatgca
aagcgtgctttgaataaaggacatgcatttgcatatgaacaatccgaatacctagcattt
gcggatgcatttccctttgaagaaaccccagaccaacaaacttcgattgatagtatttta
gaagatatgagttcaggtcagcctatggatcgggtaatttgtggtgatgtgggttttgga
aaaactgaagtggcgatgcgggcgacctttattgcagcgcaaagtggtcggcaagtagcg
gtgttagtgccaaccactttattggcacagcagcattttcaaaattttcgtgaccgcttt
gccgactggccatttcgagttgaagtattatcgcgctttcaaacccccaagcaacagaaa
gctattattgctgaattggctgatggtaaagttgatattgtgattggtacgcataaactg
ctttccaaagagattaagtaccgtgatttgggtttagtcattattgatgaagaacatcgt
tttggggtgcgtcagaaagagcatttcaaagcgatacgtcaggaagtagatttattaact
ttgacggcaacgccgattccgcggactttaaatatggccatgtcaggtttacgtgatgtt
tccattattgcgactccaccacctaaccgccatgcgattcgtacttttatttcagaatgg
attgattcattagttaaggaagcttgtcagcgagaaattaagcgtggtgggcagatgtat
tttttgcataatgatgttaaatctatggataaaatggcgcgtgaattagaaaaactggtg
ccagaagcgcgtattgaaatagcacatgggcagatgcctgagcgtgaactagagcgtatt
atgttggatttttatcaccaacgttttaatgtgttattgagtactacgattattgaaagt
ggtattgatattccgacagccaatacgattatcattaaccgtgctgataaattaggttta
gcacaattgcatcaactgcgtggccgagtagggcgttcgcaccatagagcttatgcttat
ttcattaccccgcctaaaaaattgatgagtaaagatgcggtaaaacgcttggaggcttta
gaaacgtcaggtgaattaggtgcaggatttttgttatcaactcatgatatggaaattcgc
ggagcaggggagttattgggcgatggtcaaagtggacaaattcaggagataggctttact
ttatatactgaattgctggagcgagctgtgaatgctttaaaatcgggtaagcaaccagaa
ctggatgcacccatgcatacagggacagaggttgatttgcagactgctgccttgattcct
gaagattatttgcctgatattcatgcgcgcttggtattatataagcgtattgccagtact
gatagtaaagatgaattaaaggcattgcagattgaaatgattgatcgttttggcctgtta
ccggagcaaactaaggccttgtttgcagtgacggagttaaagcagcaagccagtgatatt
ggggtgaagaaaattgatgcacatggagaaggtgggcgtttgctatttgccgctgaccct
aaattgaatatgcaacaattattaatgttgattcagacacaagccaatatatataagttt
gagggcggcgataaactgcgctttacccaaaaatttgccactactgatgataaaatagcg
tttattagcacgttattaactcaattaacggatgattcatga
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