Methyloprofundus sp. INp10_methR40d: methR_P3816
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Entry
methR_P3816 CDS
T07025
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mein
Methyloprofundus sp. INp10_methR40d
Pathway
mein03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mein00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
methR_P3816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mein03019
]
methR_P3816
03009 Ribosome biogenesis [BR:
mein03009
]
methR_P3816
Enzymes [BR:
mein01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
methR_P3816
Messenger RNA biogenesis [BR:
mein03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
methR_P3816
Ribosome biogenesis [BR:
mein03009
]
Prokaryotic type
rRNA helicases
methR_P3816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
AAA_19
UvrA_inter
Cas3-like_C_2
EST1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCG65944
UniProt:
A0A7R6WBV8
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All DBs
Position
4223164..4224909
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AA seq
581 aa
AA seq
DB search
MTSEVSTLPKFSELNLIEPLLKGLDEVGYETPSPIQAQMIPLVLAGKDVLGQAQTGTGKT
AAFALPLLSKLDIKQKDPQVLVLAPTRELAIQVAEAFQTYAKHIKGFHVAPIYGGQDYSG
QLRMLRRGAHVVVGTPGRVMDHMRKGTLKLDNLSCLVLDEADEMLRMGFIDDVEWVLEQL
PENSQRALFSATMPTAIRRIANNYLRDPEHVTIKVKTTTAETIRQRYWTVSGMHKLDALT
RILEAENFDGIIIFVRTKNSTIELAEKLEARGYSAAAINGDLAQNQREKTIQKLKNGRLD
ILVATDVAARGLDVQRISHVINYDIPYDTEAYVHRIGRTGRAGRTGDAILFVAPREKRML
HAIERATKQRIDLMEMPSTEVINDKRVSRFKQKITDTLATEELEFYNKIIEQYETEHDIP
AVEIAAALAKLVQGDEPLLLKKPAKVKERSERGRDRNDRDRKRKGGTLLGGDMERFRIEV
GKEHGAKPGNIVGAIANEAGLDGKAIGQIDMHSTFSIVDLPKGMPKEVLQELQNTRVAGQ
QLRMTEVQEGDNNPPRQEKSSSRRGGGDKSNRKPRRSPRSN
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgacctccgaagtatcaacacttccaaaattttctgaattaaatcttattgaaccactc
ttaaaagggcttgatgaagtgggctatgaaaccccttctcctatccaagcgcaaatgatt
ccgctagtgctagcaggcaaagatgttctcggccaagcacagactggaacaggaaaaacc
gctgcttttgctttaccattattatctaaactagatattaaacaaaaagacccacaagtt
ttagttttagcacccacacgtgagttagcgattcaggttgccgaagcatttcaaacgtac
gcaaaacatatcaaaggttttcatgtcgcgcctatttatggcggccaagattattctggt
caattacgtatgctcagacgtggtgcacatgttgtggtaggaacccctggtcgagtcatg
gaccatatgcgtaaaggcactttaaagttagataatttatcatgcttagttttagatgaa
gccgatgaaatgctacgcatgggctttattgatgatgtcgagtgggttttagagcagctt
cccgagaatagccaaagagcactgttttctgcaacgatgccgacggctattcgccgtatt
gctaataattatttacgtgaccctgagcacgttaccattaaagtaaaaaccacgactgca
gaaactattcgtcagcgttattggacggttagtggcatgcataagttagatgcgttaacc
cgtattttagaagcagaaaattttgatggcatcattatttttgtgcgtactaaaaattcc
actattgagctagcagaaaagttagaagcacgtggttattccgcagcagccattaatggt
gatttagcgcaaaatcaacgtgaaaaaaccattcaaaaattaaaaaatggcagactagat
attttagttgccaccgatgttgctgcgcgtggtttggatgtacagcgtatcagtcatgtt
attaactatgatattccttacgataccgaagcatatgtgcatcgtattggacgtacagga
cgtgcagggcgcacaggtgatgcgattctatttgttgcaccacgtgaaaaacgtatgtta
catgctattgagcgcgcgactaaacagcgtattgatttaatggagatgccttctactgag
gtaattaatgacaagcgtgttagtcgttttaaacaaaaaattaccgatactttagccaca
gaagaattagagttctataacaaaattattgaacaatatgaaactgagcacgatattccc
gcagtggaaattgcagcagctttagctaaattagtacaaggtgatgagcctttattattg
aaaaaacctgctaaagtaaaagaacgttccgagcgggggcgtgatcgtaatgatcgcgat
agaaaacgtaaaggtggcaccttattaggtggcgatatggaacgttttcgtattgaagtt
ggcaaagaacatggtgcgaaaccaggtaatatcgttggtgctatcgccaatgaagcgggc
ttggatggtaaagcaattggtcaaattgatatgcatagtacttttagtattgttgattta
ccaaaaggcatgcctaaagaagttttacaagagctacaaaatacacgtgttgcaggccaa
caattacgtatgactgaggtgcaagagggcgataacaatcctccacgccaagaaaaatca
tcttcgcgtcgcggtggtggtgataagtcgaatagaaagccacgtagaagcccacgtagt
aattaa
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