KEGG   Mesorhizobium sp. INR15: GA829_04845
Entry
GA829_04845       CDS       T11813                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
meir  Mesorhizobium sp. INR15
Pathway
meir03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:meir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GA829_04845 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:meir03021]
    GA829_04845 (rho)
   03019 Messenger RNA biogenesis [BR:meir03019]
    GA829_04845 (rho)
Transcription machinery [BR:meir03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     GA829_04845 (rho)
Messenger RNA biogenesis [BR:meir03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     GA829_04845 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB NACHT S1CSD-TOTE-2 AAA_25 AAA_22 DnaB_C
Other DBs
NCBI-ProteinID: QPC89969
LinkDB
Position
1017126..1018391
AA seq 421 aa
MQEMKLAEFKNKKPPELIAYAETLEVENASVMRKQELMFAILKKLAAQDIEIIGDGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVN
TINFDDPEKIRHKIHFDNLTPLYPTKRLKMEIENPTSKDISPRVIDLVAPIGKGQRALIN
AQPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNCEIQLDRKVADKRIYPA
MDILKSGTRKEDLLVSKQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKTNADFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcaagaaatgaaactcgcagagttcaagaacaagaaaccgccagagctgatcgcttat
gccgaaacgctcgaggtcgagaacgccagtgtcatgcgcaagcaggaactgatgttcgcg
atcctgaagaagctggcagcccaggacatcgaaatcatcggcgacggtgtggtcgaagtg
ctgcaggacggttttggcttcctgcgctccgccaatgccaattacctgccaggtcccgat
gatatctacatctcgccgtcgcagatccggcgcttttcgctgaagaccggcgatacggtc
gaaggaccgattcgcagccccaaagagggcgagcgctatttcgcgctgctcaaggtcaat
acgatcaatttcgacgatcccgaaaagatccggcacaagatccacttcgacaatctgact
ccgctctatccgaccaagcggctgaagatggaaatcgaaaatccgaccagcaaggacatc
tcgccgcgtgtcatcgatctggtcgcgccgatcggcaagggacagcgcgcgctgatcaat
gcacagccgcgtaccggcaagactgttctcatgcagaacatcgcgcactcgatcacggcc
aaccatccggaatgctatctgatcgtccttctgatagatgagcgcccggaggaagtgacc
gacatgcagcgctccgtgaagggtgaggtgatcgcctcgaccttcgacgaaccggcggtg
cgtcacgtccaggtcgcggaaatggtgatcgagaaagccaagcgcctggtcgaacatggc
cgcgatgtcgttattctcctcgattcgatcactcgccttggccgcgcctacaacaccgtg
gtgccatcatccggcaaggtgctgaccggcggtgtcgatgccaatgcgctgcagcggccg
aagcgcttcttcggtgccgcgcgtaacatcgaggaaggtgggtcgctgaccatcatcgcg
accgccctgatcgatactggcagccgcatggacgaagtcatcttcgaggagttcaagggc
accggcaattgtgaaatccagctcgaccgcaaggtggctgacaagcgcatctatccggcc
atggacattttgaagtccggcacccgcaaggaggaccttctggtttccaagcaggacctg
cagaagatcttcgtgctgcgccgcatcctggcgccgatgggaacgaccgacgcgatcgag
ttcctgatcgacaagctcaagcagaccaagaccaacgccgatttctttgattcgatgaat
acctga

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