Methanosphaera sp. ISO3-F5: PXD04_00250
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Entry
PXD04_00250 CDS
T09686
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K03044
DNA-directed RNA polymerase subunit B' [EC:
2.7.7.6
]
Organism
meis
Methanosphaera sp. ISO3-F5
Pathway
meis03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PXD04_00250 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meis03021
]
PXD04_00250 (rpoB)
Enzymes [BR:
meis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PXD04_00250 (rpoB)
Transcription machinery [BR:
meis03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
PXD04_00250 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Zf_2nd_IFT121
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
WQH64263
LinkDB
All DBs
Position
1718476..1720287
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AA seq
603 aa
AA seq
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MATVKIYINGKLVGTTEEPEAFVEEVKAKRRSNELTHELNITFYEENNEIFIFTDPGRAR
RPVVIVEDGKSMLTDDIIDKVTEGKMKWFDLIHEGIIEYIDAEEEENAYIAMFEEDLTEE
HTHLEIDPSTMLGICAGIIPYANHNSSPRNTMEAGMTKQALGLYVSNYNLRTDTRAHLLH
QPQMPVVKTKSMVSTEYDKRPSGQNFVVAILSYQGCNMEDALVMNKAALERGLGRSSFFR
SYEASERRYPGGQEDHFEYPENMVRGYRSEEVYKNLDEDGLINPEVTVESGDVLIGKTSP
PRFLEDVDEFGTVAERRRETSVTVRHGEHGIVDKVMLTETIEGSKLAKVKVRDHRQPEYG
DKFASRHGQKGVLGLIVPQENMPFNEEGMCPDLMINPHAIPSRMSIGQIIEMLAGKAGCM
EGTRVDGTPFTGVPEEEIKRLLKENGFETHGREQLYNGITGERFNAEIFVGVAYYQKLHH
MTSDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDK
YEALICGDCGRLAVRDKIRDRTYCAICGETESFPIEISYAFKLLLDELKSLCISPNLVLE
DKA
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagttaaaatttatataaacggtaaattagtcggaacaaccgaagaaccagaa
gcatttgttgaagaggttaaagctaaaagaagatctaatgagttaacacatgaattaaac
attacattctatgaagaaaataatgaaatattcatattcacagatcctggaagagcaaga
agacctgtagtaatagtagaagatggtaaatcaatgctaactgatgacatcatcgacaaa
gttacagaaggaaaaatgaaatggttcgacctcatccatgaaggtatcatagaatacatt
gatgcagaagaagaagaaaacgcatacatcgcaatgttcgaagaagacctgacagaggaa
catacacaccttgaaatagacccttcaacaatgctaggtatatgtgcaggaattattcca
tacgctaaccataactcttcaccaagaaacacaatggaagcaggtatgacaaaacaggca
cttggattatacgtatccaactataatctaagaactgatacaagagcacacctcttacac
cagccacaaatgcctgtagttaaaaccaaaagtatggtatcaacagaatatgataaaaga
ccatccggtcaaaactttgtagtggcaattctatcataccagggatgtaacatggaagac
gctcttgttatgaacaaagcagcactagaaagaggactgggtagatcatcattcttcagg
tcatacgaagcatcagaaagaagatatcctggtggacaagaagaccacttcgaataccct
gaaaacatggtacgaggataccgttcagaagaagtgtacaaaaaccttgacgaagacgga
ctcataaaccctgaagtaacagtagaaagtggagatgtactgattggtaaaacttcacca
ccaagattcctggaagatgttgatgaattcggtacagtagcagaaagaagacgtgaaacc
agtgtaacagtaagacacggtgaacatggtatagttgacaaggtaatgctaacagaaacc
atagaaggaagtaaattagcaaaagtcaaagtacgtgaccaccgacaaccagaatatggg
gataaatttgcatcacgtcacggacagaaaggagtgcttggacttatagtaccccaggaa
aacatgcctttcaacgaggaaggaatgtgtcctgacctaatgataaacccacatgctatc
ccatcaaggatgtctatcggacagattattgagatgcttgctggtaaagcaggttgtatg
gaaggtacacgtgtggatggaacaccatttactggagtaccagaagaagaaattaaacgt
ttacttaaagaaaacggcttcgaaactcatggacgtgaacaattatacaatggtataact
ggtgaaagatttaatgcagaaatctttgtaggagtagcatactaccagaaacttcaccat
atgactagtgacaaagtatacgctagaagtcgtggaccagtacaggtattaacacgtcag
cctaccgaaggaagagcaagagaaggtggacttagatttggggaaatggaacgtgactgt
cttatcgcacacggagcagcacttgcacttaaagaaagattacttgatgaatcagataag
tacgaagctctcatatgtggtgactgtggaagactagcagtacgtgataagataagagac
agaacttactgtgcaatctgtggagaaacagaatcattcccaatcgagatttcatacgca
ttcaaattattacttgatgaattgaaatcattatgtatttcaccaaacttagtactagaa
gataaagcataa
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