Methanosphaera sp. ISO3-F5: PXD04_00370
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Entry
PXD04_00370 CDS
T09686
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
meis
Methanosphaera sp. ISO3-F5
Pathway
meis03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
meis00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PXD04_00370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meis03021
]
PXD04_00370
Transcription machinery [BR:
meis03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
PXD04_00370
Prokaryotic type
Archaeal type
TFB
PXD04_00370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Sigma70_r4
Lar_restr_allev
Ribosomal_S27e
Zn_ribbon_tTFIIB
HTH_Tnp_ISL3
Cyclin_C
A2L_zn_ribbon
Zn_ribbon_PaaD
Auto_anti-p27
Zn_ribbon_IS1595
Zn_ribbon_LysW
Cas12f1-like_TNB
DUF3797
BRF2-like_C_cyclin_rpt
Zn_ribbon_5
Ribosomal_S27
UPF0181
Trm112p
Motif
Other DBs
NCBI-ProteinID:
WQH65313
LinkDB
All DBs
Position
1753331..1754266
Genome browser
AA seq
311 aa
AA seq
DB search
MKEDVAEMEKQETICPECGSTKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQR
DKRTRVGAPITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATE
RNLAFALSELDRDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRC
KVPRTLDEIADVSRVSKKEVGRTYRFLTRELHIRLPPTSPIDYVPRFASELNLSGVVQSK
AIEIINKAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKE
LTEQLDVGVNL
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagacgtggcagaaatggaaaaacaagaaaccatctgcccagaatgtggatca
acaaaactaatcaacgaccatgaaagaggagaagtagtctgtggggcatgtggactcgta
atagatgataacatagtggacatgggaccagaatggagagcattcgaccatgaacaaaga
gacaaacgtacaagagtaggagcaccaatcacctacacaatacacgacaaaggactctcc
acaatgattgactggagaaacaaggacatctatggaagagacataccagcaagaaacagg
gcacaatggtacaggctaagaaaatggcagagaaaaataagaatcagtggagcaacagaa
agaaaccttgcatttgcattaagtgaactggacagagactcctcaagactcggactgcca
agatcagtacgtgaatcagcatcagtagtatacaggaacgcagtagaaaacaaactcata
cgaggaagaagtattgagggagtagtggcagcatcactatacgcagcatgcagaagatgt
aaagtaccaagaacactcgatgaaatagccgatgtatcacgtgtaagcaagaaagaagtt
ggaagaacatacaggttcttaaccagagaattacatatcagattacctccaacaagtcct
atagattacgttccaagatttgcaagtgaactaaacctttcaggtgtagtgcaatctaag
gcaatagaaataattaacaaggcaatggacaatggactaactagtggtcgtggacctacc
ggtgttgcagcagcagcattatacattgcaagtgtactcttgggtgaaagaaaaactcag
cgtgatgttgcagacattgcgggggtaacagaagttacaatacgtaaccgttacaaggaa
ttaaccgaacaattggatgttggagtaaacctataa
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