Methanosphaera sp. ISO3-F5: PXD04_01330
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Entry
PXD04_01330 CDS
T09686
Symbol
rrp42
Name
(GenBank) exosome complex protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
meis
Methanosphaera sp. ISO3-F5
Pathway
meis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PXD04_01330 (rrp42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meis03019
]
PXD04_01330 (rrp42)
Messenger RNA biogenesis [BR:
meis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PXD04_01330 (rrp42)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PXD04_01330 (rrp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
WQH64467
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Position
complement(1985900..1986703)
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AA seq
267 aa
AA seq
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MVNIISEVSKDKVFDLLNHEQRIDDREFSEYRDIKIKTGFIKKADGSAMVSIGGTTVLAG
VKAQVATPFPNSPDSGIIITNAELLAIASRNFEYGPPNKFAVEISRVVDRTIREAPLIDL
GKLCIVEGSKVWKLHVDIDILDFDGNLMDATCLAAVSALLTTKIPTAKFVNDELSIDEDH
LAGLPILNKSVLCTVVKVNDQLIVDPIHVEETLMEASLSIGFREDGTLCALQKCGLNVMT
GREVMQSMSMAFNHSRDMFSLLEKLKP
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatattatctctgaagtatcaaaggataaggtttttgatttattgaatcatgaa
cagcgtattgatgatagggaattttcggagtatcgtgatatcaaaattaaaactggtttt
attaaaaaggctgatggttcggctatggtgtctattggtggtactactgttcttgcgggt
gtgaaggctcaagttgctacgcctttccctaatagtcctgatagtggtattatcattact
aatgctgagttgcttgctattgctagtcgtaattttgagtatggtccgcctaataagttt
gctgttgaaatttcccgtgttgttgacagaactattcgtgaggctcctcttattgatttg
ggtaagttatgtattgttgagggcagtaaggtttggaagttgcatgttgatattgatatc
ttggattttgatggtaatttgatggatgctacttgtttggctgctgttagtgcattgtta
actactaagattcctactgctaagtttgttaatgatgagttgtctattgatgaggatcat
ttagctggtctgcctatattgaataagagtgttttatgtactgttgttaaggttaatgat
cagttgattgtggatcctattcatgttgaggagactttgatggaggctagtctttctatt
ggttttagggaggatggtactttgtgtgctcttcaaaagtgtggtttaaatgttatgact
ggcagggaagttatgcagtcgatgagtatggcttttaatcatagtagggatatgttttct
ttacttgaaaagttgaaaccataa
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