Methanosphaera sp. ISO3-F5: PXD04_01335
Help
Entry
PXD04_01335 CDS
T09686
Symbol
rrp41
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
meis
Methanosphaera sp. ISO3-F5
Pathway
meis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PXD04_01335 (rrp41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meis03019
]
PXD04_01335 (rrp41)
Messenger RNA biogenesis [BR:
meis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PXD04_01335 (rrp41)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PXD04_01335 (rrp41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
WQH64468
LinkDB
All DBs
Position
complement(1986684..1987400)
Genome browser
AA seq
238 aa
AA seq
DB search
MNKQFIRKDGRAFNSLRNMKMKVGVLNNADGSAYVECGNNKVLVGVYGPRELYSKKHSKP
DGAVLRCKYNMAPFSVKERKRPGPDRRSTEISKLISEAITPGIFLEKYPRSSIDISIEVL
EAEGGTRCLGIVGASLALADAEIPMRDLISACAVGKVDNHIVVDLSEEEDQTGQADMPVA
IMPRTGDITFLQMDGNLSVPEFEDALKLAFDACYFINQLQQETLLSKYGGEKDGKYYL
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgaataaacaatttattagaaaggatggacgggcatttaattctctgcgtaatatgaaa
atgaaggttggcgtgttaaataatgctgatggttccgcatatgttgaatgtggtaataat
aaggttttagttggagtgtatgggcctagagaattatattctaagaagcattcaaagccg
gatggtgctgttttaagatgtaaatataatatggcccctttttctgttaaggaacgtaaa
cggcctggacctgataggcgttcaactgaaatatccaagcttatttctgaggctattacg
ccaggtatttttttagagaaatatcctcgttcttctattgatatttcaatcgaagtattg
gaggcagagggtggtactcgttgtttaggtattgttggtgccagtcttgcccttgctgat
gctgaaattcctatgagggatttgattagtgcttgtgctgtgggtaaggttgataaccat
attgttgttgatttatctgaagaggaggatcagactggccaggcagatatgcctgttgct
attatgcctcgtacgggtgatattactttcttacagatggatggtaatttatcagttccg
gagtttgaggatgcgttgaagttggcatttgatgcttgttattttattaatcagttacag
caggaaacattgttaagtaagtacggaggagaaaaggatggtaaatattatctctga
DBGET
integrated database retrieval system
