Methanosphaera sp. ISO3-F5: PXD04_01445
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Entry
PXD04_01445 CDS
T09686
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
meis
Methanosphaera sp. ISO3-F5
Pathway
meis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PXD04_01445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meis03019
]
PXD04_01445
03009 Ribosome biogenesis [BR:
meis03009
]
PXD04_01445
Enzymes [BR:
meis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PXD04_01445
Messenger RNA biogenesis [BR:
meis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PXD04_01445
Ribosome biogenesis [BR:
meis03009
]
Prokaryotic type
rRNA helicases
PXD04_01445
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WQH64488
LinkDB
All DBs
Position
complement(2003703..2005535)
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AA seq
610 aa
AA seq
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MEKLKFKDLNISPEIQKAVEDMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGI
PLLENLDSNNKRLQAIILCPTRELAIQVAEELRKLSKYLPKIDVLPVYGGQPIDRQIKAL
QKGVQVIIGTPGRVMDHIDRRTIDLSAIKTVILDEADEMLDMGFREDIEYILEDIPFDRQ
FLLFSATLPPEIMQLAKRYQSNPEIVKITKHELTTPDVEQKYFEVKEDMKLELLSRLLDL
NNFDLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDMTQNQRDRVMHKFKRGNLEILVAT
DVAARGIDVSGVEAVFNYDIPNDNEYYVHRIGRTGRAGKTGKAFSFVSGREIYQLRDIQR
YAKTKIDQAPIPSISDVAEVKKDNFIEQLKERIETENISKEIYIIEKLIEEDYNSIDIAA
TLLKGIMDDSKYKEEEFGDTDAHEGFVRFFMSIGRKQNINVGTILNAVHEKTGLNGHQIG
NIDIFDNFSFVEIPDANASDFYRFMGDTYIENKRVHIEPARPREKSNNNSEKKFRNHNKR
SRRSRNFNPHRNDGYNKNDNYKRNNYSNDNYKKGHKRNTYRKTNYNNDYRNNYDNNNYRK
NNYRNDEFEF
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattaaaatttaaggacttaaatatatcccccgaaattcagaaagctgtggaa
gatatgggatttgaagaagcatcacccatacaatcattagctatacctcaaatattagca
cataaagatgttacaggacaagcacagaccggaactggaaaaacagcagcttttggaatt
cctttactagaaaatttagatagtaacaataagagattacaggcaattattttatgtcct
actcgtgaattagcaatacaagtggctgaagaattaagaaaattatcaaaataccttcca
aaaatagatgtgctcccagtttatggaggacaacctatagatagacagattaaagctctt
caaaaaggagtgcaggtaataattggaactcctggaagagttatggatcatattgataga
agaactattgatttaagtgctataaaaacagttattcttgatgaagcagatgaaatgttg
gatatgggttttagagaagatatagagtatatattagaagacataccatttgacagacag
tttttactcttctcagcaacattacctccagaaattatgcaattagccaaaaggtatcag
agcaacccggaaattgttaaaattacaaaacatgaactaacaacaccagacgtggaacag
aaatactttgaagttaaagaagacatgaaactagaattattatcaagactattagattta
aataactttgatttatcattagtattctgtaacactaaacgaaaagtagataagcttgtt
agtcacttgcaaatcagaggatacctggcagatggattacacggagatatgacacaaaac
cagagagatcgtgtgatgcataaatttaaacgtggaaacctggaaatactggttgcaact
gatgtggccgcacgtggaattgatgtaagcggggttgaagcagtatttaattatgatatt
cctaacgataatgagtattatgttcataggataggcagaacaggaagagccggtaaaacc
ggaaaagcatttagttttgtttcaggccgtgaaatatatcaattaagagatattcagcgt
tatgcaaaaactaagatagatcaagcacctataccatcaattagtgatgttgccgaagtt
aaaaaggataactttattgaacaactaaaagaacgtatagaaacagagaacatttcaaag
gaaatatacattatcgaaaaacttatcgaagaggattataattccatcgatattgctgca
acattacttaagggcataatggatgatagtaagtataaagaggaagaatttggagatact
gatgcacatgaaggatttgtacgattctttatgagtattggaagaaaacagaacataaat
gttggcactatccttaatgctgttcatgaaaaaacaggacttaacggtcatcaaatagga
aatattgacatttttgataatttctcatttgtagaaattcctgatgcaaatgcttcagat
ttttatagatttatgggagatacatatattgagaataaaagagttcatatagaacctgca
cgtcctcgtgaaaaatccaataataattctgagaaaaagttcagaaaccataataaacgt
tctagaagaagcagaaattttaatccacacaggaatgatggttataataagaatgataat
tataagagaaataattattctaatgataactataagaaaggtcataagagaaatacttat
agaaaaactaattataacaatgattaccgaaataattatgataacaacaattatcgtaaa
aataattatagaaatgatgaatttgaattctaa
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