Methanosphaera sp. ISO3-F5: PXD04_01805
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Entry
PXD04_01805 CDS
T09686
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
meis
Methanosphaera sp. ISO3-F5
Brite
KEGG Orthology (KO) [BR:
meis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meis03019
]
PXD04_01805
Messenger RNA biogenesis [BR:
meis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PXD04_01805
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
Cas3_HD
HDOD
TBPIP_C
FTCD_C
Motif
Other DBs
NCBI-ProteinID:
WQH64555
LinkDB
All DBs
Position
complement(2080761..2081648)
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AA seq
295 aa
AA seq
DB search
MSKKEEDYIKKFNQTRPITSQFLVKHKEIKRTKTNKPYLELILQDKTGQIVGRMFDKKSY
NQYEKMEINKVYNIVGKIQEFPQYSNKYNILIDRILISKKYDEEDFIRKIENHEEHIQYL
TNTIKEIKDKELKQVLNAVFNDEEIYNKFIQAPAAKKHHHNYKGGLLVHTNEVIEICKSI
STIYENINRDLLITGAILHDIGKIETYDYDSELIEIKQEGIMLEHLFIGGCIIKEKMNNL
NISNDTKIAIMHLILSHHGKVDLGWGSSVDPKTVEAIALHQADDMSAKITKFLEI
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaaaaaaagaagaagattatattaaaaaatttaaccaaaccaggccaatcaccagc
caatttcttgtaaaacacaaggaaataaaacgaacaaaaaccaacaaaccatacctagaa
ctaatactacaagacaaaacagggcaaatagtaggaagaatgtttgataagaaatcttac
aaccaatacgaaaaaatggaaataaacaaagtatacaacatagtaggaaaaatacaagaa
ttcccacaatactcaaacaaatacaacatactaatagacagaatactcatatcaaaaaaa
tatgacgaagaagacttcataagaaaaatagaaaatcacgaggaacacatacaatactta
accaacacaatcaaagaaataaaagacaaagaacttaaacaagtactgaatgcagtattt
aatgatgaagaaatatataacaaatttatacaagcaccagcagcaaaaaaacatcatcac
aactacaaaggaggcttattagtccacacaaatgaagtgatagaaatatgtaaatcaata
tcaacaatatatgaaaacatcaaccgagacttactaatcactggagcaatcctacacgat
ataggaaaaattgaaacatacgactacgactccgaactaattgaaataaaacaagaagga
ataatgctagaacacttatttattggcggatgcatcataaaagaaaaaatgaacaattta
aacatttcaaacgatactaaaatagctataatgcacctaatactaagccatcatggaaaa
gtagacctaggatggggttcatcagtagatccaaaaacagttgaagccatagcactacat
caagcagatgatatgagtgctaaaattacaaaatttttagagatataa
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