Methanosphaera sp. ISO3-F5: PXD04_02195
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Entry
PXD04_02195 CDS
T09686
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
meis
Methanosphaera sp. ISO3-F5
Pathway
meis04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
meis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
PXD04_02195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meis03019
]
PXD04_02195
03009 Ribosome biogenesis [BR:
meis03009
]
PXD04_02195
04131 Membrane trafficking [BR:
meis04131
]
PXD04_02195
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
meis04147
]
PXD04_02195
Messenger RNA biogenesis [BR:
meis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
PXD04_02195
Ribosome biogenesis [BR:
meis03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
PXD04_02195
Membrane trafficking [BR:
meis04131
]
SNARE
SNARE associated proteins
Others
PXD04_02195
Autophagy
Aggrephagy
Other aggrephagy associated proteins
PXD04_02195
Exosome [BR:
meis04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
PXD04_02195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_2
CDC48_2
AAA_14
TIP49
AAA_22
AAA_lid_PRS2_C
nSTAND3
AAA_5
AAA_33
NPHP3_N
AAA_28
AAA_18
RNA_helicase
AAA_3
Sigma54_activat
ABC_tran
IstB_IS21
DUF815
AAA_7
AAA_17
SLFN-g3_helicase
Zeta_toxin
Mg_chelatase
NB-ARC
NTPase_1
TsaE
Viral_helicase1
AAA_30
AAA_24
NACHT
ATPase
Parvo_NS1
ResIII
PhoH
bpMoxR
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WQH64628
LinkDB
All DBs
Position
complement(2162256..2164442)
Genome browser
AA seq
728 aa
AA seq
DB search
MENELKLKVAEAFSQSDIGRSVARIDPKCMEKLNLHDGDVIEIEGNKLTTATVVASKADA
SLGILRIDSYLRKNAGTSIGEEVTIRAAQIKEAKKVKLAPVDQEIAIQGNLNGVFLNRIV
NKGDIIITGVRRQQPKTSMMFDDFINQMMSNMTSIGEIKLAVVNTKPLGPVKITEDTQIE
METKPVDPNKFEGVENLIDVSYEDIGGLQNEVKKIREMVEIPLKRPELFKQLGIAAPKGV
LLHGPPGTGKTLLAKAVANETNAHFIVINGPEIMSKYVGGSEEQLREIFEEAEDNSPSII
FIDELDAIAPKRAEVSGDVERRIVAQLLTLMDGLKSRGEVVVIGATNRPDAIDEALRRPG
RFDREIEIGVPDKDERKEILEVHTRNMPLAEDVDLDELTEVTHGFVGADLEALCKEAAMR
VLRRVLPEVQTDKEVPQEVLEKMVLNKKDFKDALKEIQPSALREVLVQIPDIKWDDVGGL
EEAKQELKEAVEWPLKNPEKFRKFGINPPKGVILTGIPGTGKTLLAKAVANESDANFISV
KGPELLSKWVGDSEKGIREVFRKARQTAPTVIFFDEIDSIASTRGESSDSGVTQRVVNQL
LTEMDGMEELHDISVIAATNRKDIIDPALLRPGRFDRHVEVGLPDKKSREAIFKVHTKDM
PLASDVDLEVLAEKTEGFVGADIEAVCREAVMLTLREDLESEEVYMSEFETAMKKVKPTK
ENELVSYN
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgaactaaaactaaaagtagccgaagcattctcccaatcagacataggacga
tcagtagcaagaatagatccaaaatgcatggaaaaactaaacctacatgacggcgacgta
atcgaaatagaaggaaacaaactaacaacagccacagtagtagcatccaaagcagacgca
agcctaggaatactcagaatagacagctacctaagaaaaaacgcaggaacatccatagga
gaagaagtaacaataagagcagcacaaatcaaagaagcaaaaaaagtaaaactagcacca
gtagaccaagaaatagcaatacaaggaaacctaaacggagtattcctaaacagaatcgta
aacaaaggcgacataataataaccggagtaagaagacaacaaccaaaaaccagcatgatg
ttcgatgacttcataaaccaaatgatgtccaacatgacatcaatcggagaaataaaacta
gcagtagtaaacaccaaaccactaggaccagtcaaaataacagaagacacccaaatagaa
atggaaacaaaaccagtagatccaaacaaatttgaaggagtagaaaacctcatagacgtc
tcctacgaagacatcggtggactacaaaacgaagtcaaaaaaataagagaaatggtagaa
ataccattaaaaagaccagaactattcaaacaactaggaatagcagcaccaaaaggagta
ctattacacggaccaccaggaacaggaaaaacattacttgcaaaagccgttgcaaacgaa
acaaacgcacacttcatagtaatcaacggaccagaaatcatgagcaaatatgttggagga
tccgaagaacaactacgagaaatattcgaagaagcagaagacaacagcccatcaataata
tttattgatgaattagatgcaatagcaccaaaaagagcagaagtatcaggagacgtagaa
agaagaatagtagcacaattactaacattaatggatggccttaaaagcagaggagaagta
gttgtaataggagcaacaaacagaccagatgcaatagacgaagcactaagaagacctgga
agattcgaccgtgaaatagaaataggcgtaccagacaaagacgaaagaaaagaaatactc
gaagtacatacaagaaacatgccactagcagaagacgtagaccttgacgaattaacagaa
gtcacacacggatttgtaggtgcagacctagaagcattatgtaaagaagcagcaatgaga
gtactaagaagagtactaccagaagtacaaacagacaaagaagtaccacaagaagtacta
gaaaaaatggtacttaacaaaaaagacttcaaagatgcattaaaagaaatacaaccatca
gcattaagagaagtattagtacaaataccagacattaaatgggatgatgttggaggatta
gaagaagcaaaacaagaacttaaagaagcagtagaatggccacttaaaaatcctgaaaaa
ttcagaaaattcggcataaacccaccaaaaggagttatactcacaggaatacctggaaca
ggtaaaacattacttgcaaaagctgttgcaaacgaaagtgatgcaaacttcatatccgta
aaaggtccagaattattatccaaatgggtaggagactctgaaaaaggaataagagaagtg
ttcagaaaagcaagacaaaccgcaccaacagtaatattctttgatgaaatagattcaatt
gcatctaccagaggagaaagtagtgatagtggagtaacacaaagagttgtaaaccaatta
cttacagaaatggatggaatggaagaattacatgacatttcagtaattgcagcaaccaac
cgtaaagacataatagatccagcattacttagaccaggacgatttgatagacacgttgaa
gtaggattaccagataaaaaatcaagagaagcaatattcaaagtacataccaaagacatg
ccacttgccagtgatgtagaccttgaagtattagcagaaaaaacagaaggtttcgttgga
gcagatattgaggcagtttgcagagaagcagttatgttaactttaagagaagatcttgaa
tctgaagaagtatacatgtctgaatttgaaactgcaatgaaaaaagtgaagccaacaaaa
gaaaatgaattagtttcatacaactaa
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